Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3989-RA through 18771 annotations produced 1 hits



AIR-carboxylase-SAICAR synthetase (ade5):

Annotation Number : CG3989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020513
Gbrowse : chrX:12651774-12654651 (-) // 100.0 //
Probeset : 1640599_at
Accessions : protein= NP_572826;, nucleotide= NM_132598;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0020513.
BDGP gene expression has embryonic in situ data for ade5: 21 pix of staining in 16 body parts.
BioGrid reports that CG3989 interacts with CG3989 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 44 of 4 0.20Down
Head1938 1354 of 4 2.40Up
Eye578 1364 of 4 0.71None
Thoracicoabdominal ganglion118 54 of 4 0.10Down
Salivary gland319 194 of 4 0.39Down
Crop80 54 of 4 0.10Down
Midgut79 24 of 4 0.10Down
Tubule249 144 of 4 0.30Down
Hindgut358 174 of 4 0.40Down
Heart1901 1484 of 4 2.33Up
Fat body3302 804 of 4 4.05Up
Ovary504 194 of 4 0.60Down
Testis29 14 of 4 0.00Down
Male accessory glands122 44 of 4 0.10Down
Virgin spermatheca3970 1444 of 4 4.87Up
Mated spermatheca3173 1644 of 4 3.89Up
Adult carcass2146 454 of 4 2.60Up
Larval CNS356 454 of 4 0.44Down
Larval Salivary gland312 314 of 4 0.38Down
Larval midgut112 94 of 4 0.14Down
Larval tubule149 64 of 4 0.20Down
Larval hindgut196 194 of 4 0.24Down
Larval fat body6444 6974 of 4 7.90Up
Larval trachea450 604 of 4 0.55Down
Larval carcass292 274 of 4 0.36Down
S2 cells (growing)998 134 of 4 1.22Up
Whole fly815 594 of 4

Looking for CG3989-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime