FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3989-RA through 18771 annotations produced 1 hits

AIR-carboxylase-SAICAR synthetase (ade5):

Annotation Number : CG3989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020513
Gbrowse : chrX:12651774-12654651 (-) // 100.0 //
Probeset : 1640599_at
Accessions : protein= NP_572826;, nucleotide= NM_132598;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0020513.
BDGP gene expression has embryonic in situ data for ade5: 21 pix of staining in 16 body parts.
BioGrid reports that CG3989 interacts with CG3989 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	150 ± 4	4 of 4	0.20	Down
Head	1938 ± 135	4 of 4	2.40	Up
Eye	578 ± 136	4 of 4	0.71	None
Thoracicoabdominal ganglion	118 ± 5	4 of 4	0.10	Down
Salivary gland	319 ± 19	4 of 4	0.39	Down
Crop	80 ± 5	4 of 4	0.10	Down
Midgut	79 ± 2	4 of 4	0.10	Down
Tubule	249 ± 14	4 of 4	0.30	Down
Hindgut	358 ± 17	4 of 4	0.40	Down
Heart	1901 ± 148	4 of 4	2.33	Up
Fat body	3302 ± 80	4 of 4	4.05	Up
Ovary	504 ± 19	4 of 4	0.60	Down
Testis	29 ± 1	4 of 4	0.00	Down
Male accessory glands	122 ± 4	4 of 4	0.10	Down
Virgin spermatheca	3970 ± 144	4 of 4	4.87	Up
Mated spermatheca	3173 ± 164	4 of 4	3.89	Up
Adult carcass	2146 ± 45	4 of 4	2.60	Up
Larval CNS	356 ± 45	4 of 4	0.44	Down
Larval Salivary gland	312 ± 31	4 of 4	0.38	Down
Larval midgut	112 ± 9	4 of 4	0.14	Down
Larval tubule	149 ± 6	4 of 4	0.20	Down
Larval hindgut	196 ± 19	4 of 4	0.24	Down
Larval fat body	6444 ± 697	4 of 4	7.90	Up
Larval trachea	450 ± 60	4 of 4	0.55	Down
Larval carcass	292 ± 27	4 of 4	0.36	Down
S2 cells (growing)	998 ± 13	4 of 4	1.22	Up
Whole fly	815 ± 59	4 of 4

Looking for CG3989-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720