FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3997-RA through 18771 annotations produced 1 hits

Ribosomal protein L39 (RpL39):

Annotation Number : CG3997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023170
Gbrowse : chr2R:19949372-19949952 (-) // 100.0 //
Probeset : 1626964_at
Accessions : protein= NP_477314;, nucleotide= NM_057966;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0023170.
BDGP gene expression has embryonic in situ data for RpL46: 4 pix of staining in 1 body parts.
BioGrid reports that CG3997 interacts with CG4821 CG5893 CG6459 CG7379 .
VDRC has 2 RNAi stocks for FBgn0023170 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3061 ± 69	4 of 4	0.80	Down
Head	4338 ± 216	4 of 4	1.10	None
Eye	5857 ± 140	4 of 4	1.52	Up
Thoracicoabdominal ganglion	4442 ± 84	4 of 4	1.20	Up
Salivary gland	10714 ± 483	4 of 4	2.79	Up
Crop	5513 ± 322	4 of 4	1.40	Up
Midgut	4537 ± 99	4 of 4	1.20	Up
Tubule	5189 ± 102	4 of 4	1.30	Up
Hindgut	4430 ± 86	4 of 4	1.20	Up
Heart	6443 ± 460	4 of 4	1.68	Up
Fat body	5931 ± 897	4 of 4	1.54	Up
Ovary	3325 ± 88	4 of 4	0.90	Down
Testis	1490 ± 38	4 of 4	0.40	Down
Male accessory glands	8526 ± 197	4 of 4	2.20	Up
Virgin spermatheca	6245 ± 180	4 of 4	1.62	Up
Mated spermatheca	6426 ± 164	4 of 4	1.67	Up
Adult carcass	5575 ± 214	4 of 4	1.50	Up
Larval CNS	2832 ± 196	4 of 4	0.74	Down
Larval Salivary gland	8181 ± 290	4 of 4	2.13	Up
Larval midgut	4629 ± 96	4 of 4	1.20	Up
Larval tubule	4689 ± 36	4 of 4	1.20	Up
Larval hindgut	4768 ± 59	4 of 4	1.24	Up
Larval fat body	6804 ± 748	4 of 4	1.80	Up
Larval trachea	5482 ± 73	4 of 4	1.43	Up
Larval carcass	4713 ± 341	4 of 4	1.23	None
S2 cells (growing)	4584 ± 91	4 of 4	1.19	Up
Whole fly	3844 ± 166	4 of 4

Looking for CG3997-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720