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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG40006-RC through 18771 annotations produced 1 hits



(CG40006):

Annotation Number : CG40006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058006
Gbrowse : chr2L:22515148-22649081 (-) // 100.0 //
Probeset : 1638652_at
Accessions : protein= NP_001036401;, nucleotide= NM_001042936;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0058006.
Homophila reports that CG40006 is a close match (6e-38) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
BioGrid reports that CG40006 interacts with CG8609 .
TRiP has 1 RNAi stocks for FBgn0058006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 03 of 4 0.10Down
Head584 ± 324 of 4 3.50Up
Eye244 ± 144 of 4 1.45Up
Thoracicoabdominal ganglion9 ± 21 of 4 0.10Down
Salivary gland23 ± 52 of 4 0.14Down
Crop10 ± 01 of 4 0.10Down
Midgut4 ± 10 of 4 0.00Down
Tubule8 ± 11 of 4 0.10Down
Hindgut23 ± 14 of 4 0.10Down
Heart31 ± 34 of 4 0.19Down
Fat body20 ± 34 of 4 0.12Down
Ovary302 ± 64 of 4 1.80Up
Testis6 ± 12 of 4 0.00Down
Male accessory glands11 ± 00 of 4 0.10Down
Virgin spermatheca26 ± 24 of 4 0.16Down
Mated spermatheca22 ± 14 of 4 0.13Down
Adult carcass458 ± 94 of 4 2.70Up
Larval CNS7 ± 23 of 4 0.04Down
Larval Salivary gland6 ± 00 of 4 0.04Down
Larval midgut15 ± 10 of 4 0.09Down
Larval tubule6 ± 01 of 4 0.00Down
Larval hindgut24 ± 14 of 4 0.14Down
Larval fat body26 ± 23 of 4 0.20Down
Larval trachea280 ± 334 of 4 1.66Up
Larval carcass357 ± 144 of 4 2.12Up
S2 cells (growing)5 ± 00 of 4 0.03Down
Whole fly168 ± 94 of 4

Looking for CG40006-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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