FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4001-RA through 18771 annotations produced 1 hits

6-phosphofructokinase (Pfk):

Annotation Number : CG4001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003071
Gbrowse : chr2R:5997244-6004696 (+) // 100.0 //
Probeset : 1634739_a_at
Accessions : protein= NP_523676; /// NP_724890; /// NP_724891;, nucleotide= NM_078952; /// NM_165746; /// NM_165747;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005945 // 6-phosphofructokinase complex // inferred by
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003872 // 6-phosphofructokinase activity // in
FlyMine data for FBgn0003071.
BDGP gene expression has embryonic in situ data for Pfk: 10 pix of staining in 4 body parts.
Homophila reports that CG4001 is a close match (0) to human gene GSD7;PFKM (NP_000280), a gene associated with Glycogen storage disease VII, 232800 (3).
BioGrid reports that CG4001 interacts with CG5333 .
TRiP has 2 RNAi stocks for FBgn0003071 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003071 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	641 ± 16	4 of 4	1.40	Up
Head	652 ± 10	4 of 4	1.40	Up
Eye	681 ± 22	4 of 4	1.46	Up
Thoracicoabdominal ganglion	749 ± 30	4 of 4	1.60	Up
Salivary gland	842 ± 12	4 of 4	1.81	Up
Crop	811 ± 25	4 of 4	1.70	Up
Midgut	173 ± 9	4 of 4	0.40	Down
Tubule	404 ± 14	4 of 4	0.90	Down
Hindgut	944 ± 26	4 of 4	2.00	Up
Heart	539 ± 22	4 of 4	1.16	None
Fat body	533 ± 47	4 of 4	1.14	None
Ovary	396 ± 12	4 of 4	0.90	None
Testis	925 ± 19	4 of 4	2.00	Up
Male accessory glands	195 ± 6	4 of 4	0.40	Down
Virgin spermatheca	652 ± 25	4 of 4	1.40	Up
Mated spermatheca	611 ± 28	4 of 4	1.31	Up
Adult carcass	1120 ± 44	4 of 4	2.40	Up
Larval CNS	1055 ± 145	4 of 4	2.27	Up
Larval Salivary gland	390 ± 29	4 of 4	0.84	None
Larval midgut	140 ± 12	4 of 4	0.30	Down
Larval tubule	181 ± 8	4 of 4	0.40	Down
Larval hindgut	363 ± 21	4 of 4	0.78	Down
Larval fat body	202 ± 37	4 of 4	0.40	Down
Larval trachea	228 ± 48	4 of 4	0.49	Down
Larval carcass	2196 ± 259	4 of 4	4.71	Up
S2 cells (growing)	389 ± 4	4 of 4	0.84	None
Whole fly	465 ± 26	4 of 4

Looking for CG4001-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720