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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4005-RA through 18771 annotations produced 1 hits



yorkie (yki):

Annotation Number : CG4005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034970
Gbrowse : chr2R:19953502-19956008 (-) // 100.0 //
Probeset : 1628461_a_at
Accessions : protein= NP_001036568; /// NP_611879;, nucleotide= NM_001043103; /// NM_138035;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0003713 // transcription coactivator activity // non-traceable author statement /// 0003713 // transcription coactivator
FlyMine data for FBgn0034970.
BDGP gene expression has embryonic in situ data for CG4005: 16 pix of staining in 2 body parts.
Homophila reports that CG4005 is a close match (7e-14) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG4005 interacts with CG8544 CG5461 CG7417 CG9506 .
TRiP has 2 RNAi stocks for FBgn0034970 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain341 ± 114 of 4 1.80Up
Head177 ± 44 of 4 0.90None
Eye139 ± 24 of 4 0.74Down
Thoracicoabdominal ganglion281 ± 24 of 4 1.50Up
Salivary gland330 ± 84 of 4 1.77Up
Crop270 ± 84 of 4 1.40Up
Midgut182 ± 24 of 4 1.00None
Tubule376 ± 234 of 4 2.00Up
Hindgut233 ± 94 of 4 1.20Up
Heart102 ± 54 of 4 0.55Down
Fat body64 ± 94 of 4 0.34Down
Ovary361 ± 44 of 4 1.90Up
Testis202 ± 14 of 4 1.10None
Male accessory glands186 ± 134 of 4 1.00None
Virgin spermatheca91 ± 34 of 4 0.49Down
Mated spermatheca99 ± 114 of 4 0.53Down
Adult carcass120 ± 54 of 4 0.60Down
Larval CNS155 ± 24 of 4 0.83None
Larval Salivary gland252 ± 84 of 4 1.35Up
Larval midgut176 ± 104 of 4 0.94None
Larval tubule351 ± 104 of 4 1.90Up
Larval hindgut199 ± 64 of 4 1.07None
Larval fat body96 ± 54 of 4 0.50Down
Larval trachea302 ± 114 of 4 1.62Up
Larval carcass187 ± 104 of 4 1.00None
S2 cells (growing)353 ± 34 of 4 1.89Up
Whole fly187 ± 104 of 4

Looking for CG4005-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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