FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG40064-RA through 18771 annotations produced 1 hits

ARY (ARY):

Annotation Number : CG40064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058064
Gbrowse : chr3LHet:41053-42275 (+) // 87.15 //
Probeset : 1637935_at
Accessions : protein= NP_001015363; /// NP_001163844;, nucleotide= NM_001015363; /// NM_001170373;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0058064.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.50	Down
Head	2 ± 1	1 of 4	0.40	Down
Eye	1 ± 1	0 of 4	0.29	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	8 ± 1	0 of 4	1.23	None
Crop	3 ± 1	0 of 4	0.40	None
Midgut	1 ± 1	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	3 ± 1	0 of 4	0.50	None
Heart	2 ± 0	1 of 4	0.32	Down
Fat body	3 ± 0	0 of 4	0.44	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	127 ± 6	4 of 4	18.80	Up
Male accessory glands	2 ± 1	0 of 4	0.40	None
Virgin spermatheca	2 ± 1	0 of 4	0.40	Down
Mated spermatheca	2 ± 0	0 of 4	0.29	Down
Adult carcass	3 ± 0	0 of 4	0.60	None
Larval CNS	0 ± 0	0 of 4	0.10	Down
Larval Salivary gland	1 ± 0	1 of 4	0.25	Down
Larval midgut	1 ± 0	0 of 4	0.17	Down
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	0 ± 0	0 of 4	0.12	Down
Larval fat body	11 ± 6	1 of 4	1.70	None
Larval trachea	3 ± 0	1 of 4	0.51	None
Larval carcass	1 ± 0	0 of 4	0.26	Down
S2 cells (growing)	1 ± 0	0 of 4	0.17	Down
Whole fly	6 ± 1	3 of 4

Looking for CG40064-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720