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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4008-RA through 18771 annotations produced 1 hits



uninitiated (und):

Annotation Number : CG4008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025117
Gbrowse : chr2L:9763344-9765358 (+) // 100.0 //
Probeset : 1627059_at
Accessions : protein= NP_477373;, nucleotide= NM_058025;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0025117.
BDGP gene expression has embryonic in situ data for und: 9 pix of staining in 19 body parts.
BioGrid reports that CG4008 interacts with CG7352 .
VDRC has 3 RNAi stocks for FBgn0025117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain528 74 of 4 0.50Down
Head659 194 of 4 0.60Down
Eye963 244 of 4 0.87Down
Thoracicoabdominal ganglion692 154 of 4 0.60Down
Salivary gland704 94 of 4 0.63Down
Crop1364 124 of 4 1.20Up
Midgut837 214 of 4 0.80Down
Tubule953 364 of 4 0.90Down
Hindgut1058 214 of 4 1.00None
Heart1077 364 of 4 0.97None
Fat body833 624 of 4 0.75Down
Ovary1374 254 of 4 1.20Up
Testis1293 444 of 4 1.20Up
Male accessory glands682 534 of 4 0.60Down
Virgin spermatheca1463 684 of 4 1.32Up
Mated spermatheca1454 524 of 4 1.31Up
Adult carcass780 474 of 4 0.70Down
Larval CNS1009 384 of 4 0.91Down
Larval Salivary gland836 564 of 4 0.75Down
Larval midgut681 184 of 4 0.61Down
Larval tubule1233 334 of 4 1.10Up
Larval hindgut1210 114 of 4 1.09Up
Larval fat body1160 434 of 4 1.00None
Larval trachea1628 1084 of 4 1.47Up
Larval carcass1383 514 of 4 1.25Up
S2 cells (growing)1314 184 of 4 1.18Up
Whole fly1110 294 of 4

Looking for CG4008-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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