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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4015-RA through 18771 annotations produced 1 hits



Follicle cell protein 3C (Fcp3C):

Annotation Number : CG4015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000644
Gbrowse : chrX:3067408-3068267 (-) // 100.0 //
Probeset : 1639210_at
Accessions : protein= NP_477482;, nucleotide= NM_058134;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0000644.
VDRC has 3 RNAi stocks for FBgn0000644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 24 of 4 0.00Down
Head9 ± 32 of 4 0.00Down
Eye10 ± 21 of 4 0.02Down
Thoracicoabdominal ganglion19 ± 14 of 4 0.00Down
Salivary gland13 ± 30 of 4 0.03Down
Crop7 ± 20 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule7 ± 00 of 4 0.00Down
Hindgut9 ± 00 of 4 0.00Down
Heart7 ± 12 of 4 0.02Down
Fat body16 ± 61 of 4 0.03Down
Ovary596 ± 1034 of 4 1.20None
Testis6 ± 01 of 4 0.00Down
Male accessory glands13 ± 30 of 4 0.00Down
Virgin spermatheca23 ± 34 of 4 0.05Down
Mated spermatheca25 ± 83 of 4 0.05Down
Adult carcass8 ± 31 of 4 0.00Down
Larval CNS20 ± 04 of 4 0.04Down
Larval Salivary gland14 ± 22 of 4 0.03Down
Larval midgut6 ± 10 of 4 0.01Down
Larval tubule42 ± 44 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.01Down
Larval fat body16 ± 40 of 4 0.00Down
Larval trachea10 ± 22 of 4 0.02Down
Larval carcass5 ± 10 of 4 0.01Down
S2 cells (growing)6 ± 00 of 4 0.01Down
Whole fly490 ± 1234 of 4

Looking for CG4015-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime