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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG40178-RC through 18771 annotations produced 2 hits



/// (CG40178 /// CG41320):

Annotation Number : CG40178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058178 /// FBgn0085612
Gbrowse : chr3LHet:1344052-1396405 (-) // 100.0 //
Probeset : 1625862_x_at
Accessions : protein= NP_001015187; /// NP_001015188;, nucleotide= NM_001015187; /// NM_001015188;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0058178 /// FBgn0085612.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain423 374 of 414.40Up
Head231 414 of 4 7.90Up
Eye61 44 of 4 2.08Up
Thoracicoabdominal ganglion233 224 of 4 7.90Up
Salivary gland29 44 of 4 0.99None
Crop28 24 of 4 1.00None
Midgut14 13 of 4 0.50Down
Tubule4 00 of 4 0.20Down
Hindgut25 04 of 4 0.90None
Heart14 14 of 4 0.51Down
Fat body32 144 of 4 1.11None
Ovary23 24 of 4 0.80None
Testis11 14 of 4 0.40Down
Male accessory glands62 84 of 4 2.10Up
Virgin spermatheca7 12 of 4 0.25Down
Mated spermatheca9 13 of 4 0.33Down
Adult carcass34 44 of 4 1.20None
Larval CNS145 154 of 4 4.96Up
Larval Salivary gland11 24 of 4 0.40Down
Larval midgut11 14 of 4 0.39Down
Larval tubule14 14 of 4 0.50Down
Larval hindgut22 24 of 4 0.77None
Larval fat body26 34 of 4 0.90None
Larval trachea15 43 of 4 0.53Down
Larval carcass10 14 of 4 0.37Down
S2 cells (growing)104 54 of 4 3.57Up
Whole fly29 24 of 4



/// (CG40178 /// CG41320):

Annotation Number : CG40178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058178 /// FBgn0085612
Gbrowse : chr3LHet:1344052-1396405 (-) // 100.0 //
Probeset : 1625287_at
Accessions : protein= NP_001015187; /// NP_001015188;, nucleotide= NM_001015187; /// NM_001015188;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0058178 /// FBgn0085612.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 224 of 413.70Up
Head172 324 of 4 6.90Up
Eye52 34 of 4 2.09Up
Thoracicoabdominal ganglion202 134 of 4 8.10Up
Salivary gland17 32 of 4 0.71None
Crop28 24 of 4 1.10None
Midgut10 02 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut23 24 of 4 0.90None
Heart11 23 of 4 0.46Down
Fat body28 123 of 4 1.15None
Ovary17 14 of 4 0.70None
Testis8 04 of 4 0.40Down
Male accessory glands53 64 of 4 2.10Up
Virgin spermatheca6 01 of 4 0.24Down
Mated spermatheca4 11 of 4 0.19Down
Adult carcass30 54 of 4 1.20None
Larval CNS116 134 of 4 4.64Up
Larval Salivary gland11 04 of 4 0.47Down
Larval midgut10 04 of 4 0.43Down
Larval tubule14 13 of 4 0.60Down
Larval hindgut19 14 of 4 0.77None
Larval fat body25 34 of 4 1.00None
Larval trachea14 24 of 4 0.58Down
Larval carcass10 04 of 4 0.42Down
S2 cells (growing)84 44 of 4 3.35Up
Whole fly25 34 of 4

Looking for CG40178-RC. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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