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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4021-RA through 18771 annotations produced 1 hits


(CG4021):

Annotation Number : CG4021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034659
Gbrowse : chr2R:17660849-17662330 (+) // 100.0 //
Probeset : 1628570_at
Accessions : protein= NP_611610;, nucleotide= NM_137766;
Interpro : 0003723 // RNA binding // inferred from electronic annotation
FlyMine data for FBgn0034659.
VDRC has 4 RNAi stocks for FBgn0034659 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.09Down
Crop5 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 11 of 4 0.07Down
Fat body3 ± 30 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis903 ± 384 of 413.10Up
Male accessory glands7 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca3 ± 00 of 4 0.05Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body200 ± 914 of 4 2.90None
Larval trachea7 ± 91 of 4 0.11Down
Larval carcass3 ± 11 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly69 ± 24 of 4

Looking for CG4021-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime