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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4022-RA through 18771 annotations produced 1 hits



(CG4022):

Annotation Number : CG4022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035986
Gbrowse : chr3L:9401275-9403931 (-) // 99.83 //
Probeset : 1635037_at
Accessions : protein= NP_648307;, nucleotide= NM_140050;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035986.
BDGP gene expression has embryonic in situ data for CG4022: 9 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0035986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 ± 24 of 4 2.20Up
Head32 ± 24 of 4 0.70None
Eye51 ± 24 of 4 1.12None
Thoracicoabdominal ganglion99 ± 54 of 4 2.20Up
Salivary gland25 ± 70 of 4 0.55None
Crop63 ± 34 of 4 1.40Up
Midgut29 ± 40 of 4 0.60None
Tubule26 ± 23 of 4 0.60Down
Hindgut33 ± 24 of 4 0.70None
Heart23 ± 24 of 4 0.51Down
Fat body34 ± 40 of 4 0.76None
Ovary113 ± 54 of 4 2.50Up
Testis61 ± 14 of 4 1.30None
Male accessory glands29 ± 40 of 4 0.60None
Virgin spermatheca45 ± 34 of 4 1.00None
Mated spermatheca42 ± 44 of 4 0.93None
Adult carcass26 ± 10 of 4 0.60Down
Larval CNS152 ± 184 of 4 3.32Up
Larval Salivary gland31 ± 21 of 4 0.69None
Larval midgut43 ± 34 of 4 0.94None
Larval tubule41 ± 34 of 4 0.90None
Larval hindgut48 ± 14 of 4 1.05None
Larval fat body31 ± 21 of 4 0.70None
Larval trachea49 ± 74 of 4 1.07None
Larval carcass29 ± 14 of 4 0.64None
S2 cells (growing)28 ± 13 of 4 0.61Down
Whole fly45 ± 54 of 4

Looking for CG4022-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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