FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4027-RA through 18771 annotations produced 1 hits

5C actin (Act5C):

Annotation Number : CG4027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000042
Gbrowse : chrX:5794896-5798206 (+) // 99.76 //
Probeset : 1626163_s_at
Accessions : protein= NP_001014725; /// NP_001014726; /// NP_511052; /// NP_727048;, nucleotide= NM_001014725; /// NM_001014726; /// NM_078497; /// NM_167053;
Pathway : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from sequence or stru
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0000042.
BDGP gene expression has embryonic in situ data for Act5C: 5 pix of staining in 9 body parts.
Homophila reports that CG4027 is a close match (0) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG4027 interacts with CG5061 CG4057 CG4313 CG4491 CG4584 CG4785 CG5215 CG5422 CG5466 CG6240 CG6707 CG7518 CG8668 CG9572 CG9911 CG9933 CG12051 Dmel CG34354 .
VDRC has 3 RNAi stocks for FBgn0000042 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2410 ± 24	4 of 4	0.90	Down
Head	1986 ± 221	4 of 4	0.70	Down
Eye	2342 ± 181	4 of 4	0.85	None
Thoracicoabdominal ganglion	2293 ± 107	4 of 4	0.80	Down
Salivary gland	5980 ± 104	4 of 4	2.17	Up
Crop	2055 ± 64	4 of 4	0.70	Down
Midgut	5158 ± 43	4 of 4	1.90	Up
Tubule	3871 ± 283	4 of 4	1.40	Up
Hindgut	4217 ± 123	4 of 4	1.50	Up
Heart	2024 ± 61	4 of 4	0.73	Down
Fat body	1205 ± 281	4 of 4	0.44	Down
Ovary	2377 ± 31	4 of 4	0.90	Down
Testis	1718 ± 56	4 of 4	0.60	Down
Male accessory glands	2306 ± 269	4 of 4	0.80	None
Virgin spermatheca	371 ± 52	4 of 4	0.13	Down
Mated spermatheca	666 ± 101	4 of 4	0.24	Down
Adult carcass	1612 ± 76	4 of 4	0.60	Down
Larval CNS	2751 ± 85	4 of 4	1.00	None
Larval Salivary gland	6272 ± 208	4 of 4	2.27	Up
Larval midgut	5596 ± 161	4 of 4	2.03	Up
Larval tubule	4343 ± 88	4 of 4	1.60	Up
Larval hindgut	4448 ± 54	4 of 4	1.61	Up
Larval fat body	4931 ± 474	4 of 4	1.80	Up
Larval trachea	6010 ± 353	4 of 4	2.18	Up
Larval carcass	3247 ± 87	4 of 4	1.18	Up
S2 cells (growing)	4691 ± 94	4 of 4	1.70	Up
Whole fly	2759 ± 115	4 of 4

Looking for CG4027-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720