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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4029-RA through 18771 annotations produced 1 hits



Domina (jumu):

Annotation Number : CG4029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015396
Gbrowse : chr3R:6175905-6187334 (+) // 99.77 //
Probeset : 1631242_at
Accessions : protein= NP_524302;, nucleotide= NM_079578;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007000 // nucleolus organization // inferred from mutant phen
Interpro : 0000785 // chromatin // inferred from direct assay /// 0000791 // euchromatin // inferred from direct assay /// 0005634
FlyMine data for FBgn0015396.
BDGP gene expression has embryonic in situ data for jumu: 45 pix of staining in 13 body parts.
Homophila reports that CG4029 is a close match (6e-13) to human gene AIS1;FOXD3 (NP_036315), a gene associated with {Autoimmune disease, susceptibility to, 1}, 607836 (3).
BioGrid reports that CG4029 interacts with CG5375 CG3839 .
TRiP has 1 RNAi stocks for FBgn0015396 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 84 of 4 2.10Up
Head13 ± 04 of 4 0.40Down
Eye14 ± 14 of 4 0.38Down
Thoracicoabdominal ganglion30 ± 14 of 4 0.80None
Salivary gland11 ± 41 of 4 0.29Down
Crop11 ± 04 of 4 0.30Down
Midgut10 ± 13 of 4 0.30Down
Tubule7 ± 01 of 4 0.20Down
Hindgut9 ± 04 of 4 0.30Down
Heart4 ± 00 of 4 0.12Down
Fat body14 ± 33 of 4 0.38Down
Ovary164 ± 54 of 4 4.40Up
Testis6 ± 04 of 4 0.20Down
Male accessory glands10 ± 12 of 4 0.30Down
Virgin spermatheca26 ± 14 of 4 0.71None
Mated spermatheca27 ± 34 of 4 0.74None
Adult carcass12 ± 22 of 4 0.30Down
Larval CNS688 ± 1024 of 418.40Up
Larval Salivary gland75 ± 84 of 4 2.03Up
Larval midgut33 ± 44 of 4 0.89None
Larval tubule48 ± 24 of 4 1.30None
Larval hindgut70 ± 84 of 4 1.87Up
Larval fat body19 ± 14 of 4 0.50Down
Larval trachea68 ± 44 of 4 1.83Up
Larval carcass49 ± 14 of 4 1.33None
S2 cells (growing)147 ± 44 of 4 3.95Up
Whole fly37 ± 54 of 4

Looking for CG4029-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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