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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4033-RA through 18771 annotations produced 1 hits



RNA polymerase I (RpI135):

Annotation Number : CG4033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003278
Gbrowse : chr2L:404285-408049 (+) // 100.0 //
Probeset : 1627924_at
Accessions : protein= NP_476708;, nucleotide= NM_057360;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0003278.
BDGP gene expression has embryonic in situ data for RpI135: 9 pix of staining in 17 body parts.
VDRC has 1 RNAi stocks for FBgn0003278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 0.40Down
Head29 34 of 4 0.40Down
Eye25 44 of 4 0.33Down
Thoracicoabdominal ganglion38 24 of 4 0.50Down
Salivary gland49 64 of 4 0.64Down
Crop43 14 of 4 0.60Down
Midgut46 24 of 4 0.60Down
Tubule40 94 of 4 0.50Down
Hindgut29 14 of 4 0.40Down
Heart28 14 of 4 0.37Down
Fat body66 34 of 4 0.85None
Ovary146 44 of 4 1.90Up
Testis10 04 of 4 0.10Down
Male accessory glands110 44 of 4 1.40Up
Virgin spermatheca56 14 of 4 0.73Down
Mated spermatheca97 24 of 4 1.25Up
Adult carcass50 34 of 4 0.60Down
Larval CNS119 64 of 4 1.53Up
Larval Salivary gland65 64 of 4 0.84None
Larval midgut45 24 of 4 0.58Down
Larval tubule16 14 of 4 0.20Down
Larval hindgut57 34 of 4 0.74Down
Larval fat body20 31 of 4 0.30Down
Larval trachea74 74 of 4 0.95None
Larval carcass76 184 of 4 0.98None
S2 cells (growing)164 54 of 4 2.12Up
Whole fly77 64 of 4

Looking for CG4033-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime