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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4035-RB through 18771 annotations produced 1 hits



eukaryotic initiation factor 4E (eIF-4E):

Annotation Number : CG4035
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015218
Gbrowse : chr3L:9392717-9395565 (-) // 100.0 //
Probeset : 1629970_s_at
Accessions : protein= NP_524829; /// NP_729480; /// NP_729481; /// NP_729482; /// NP_729483; /// NP_729484; /// NP_729485;, nucleotide= NM_080090; /// NM_168333; /// NM_168334; /// NM_168335; /// NM_168336; /// NM_168337; /// NM_168338;
Pathway : 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005737 // cytoplasm // inferred from dire
Interpro : 0000339 // RNA cap binding // inferred from direct assay /// 0000339 // RNA cap binding // inferred from sequence or str
FlyMine data for FBgn0015218.
BDGP gene expression has embryonic in situ data for eIF-4E: 17 pix of staining in 15 body parts.
BioGrid reports that CG4035 interacts with CG6642 CG8846 CG9674 CG9975 CG11181 .
TRiP has 1 RNAi stocks for FBgn0015218 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1070 124 of 4 1.10None
Head805 154 of 4 0.80Down
Eye1041 374 of 4 1.04None
Thoracicoabdominal ganglion1238 484 of 4 1.20Up
Salivary gland1301 574 of 4 1.30Up
Crop1023 64 of 4 1.00None
Midgut643 154 of 4 0.60Down
Tubule916 224 of 4 0.90Down
Hindgut662 64 of 4 0.70Down
Heart806 94 of 4 0.80Down
Fat body870 494 of 4 0.87Down
Ovary1605 214 of 4 1.60Up
Testis814 154 of 4 0.80Down
Male accessory glands1631 354 of 4 1.60Up
Virgin spermatheca1616 534 of 4 1.61Up
Mated spermatheca1809 934 of 4 1.80Up
Adult carcass707 214 of 4 0.70Down
Larval CNS1322 424 of 4 1.32Up
Larval Salivary gland1838 604 of 4 1.83Up
Larval midgut842 334 of 4 0.84Down
Larval tubule962 184 of 4 1.00None
Larval hindgut1025 254 of 4 1.02None
Larval fat body714 74 of 4 0.70Down
Larval trachea1170 1194 of 4 1.17None
Larval carcass1270 974 of 4 1.27None
S2 cells (growing)1490 224 of 4 1.49Up
Whole fly1002 354 of 4

Looking for CG4035-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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