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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG40354-RA through 18771 annotations produced 2 hits



(CR40354):

Annotation Number : CG40354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058354
Gbrowse : chr3LHet:687536-688161 (+) // 100.0 // /// chr2R:2640168-2642313 (+) // 94.04 //
Probeset : 1639090_a_at
Accessions : protein= NP_001015225; /// NP_001015226;, nucleotide= NM_001015225; /// NM_001015226;
FlyMine data for FBgn0058354.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 03 of 4 0.70None
Head13 12 of 4 0.70None
Eye4 10 of 4 0.20Down
Thoracicoabdominal ganglion12 20 of 4 0.60None
Salivary gland11 20 of 4 0.55Down
Crop14 10 of 4 0.70None
Midgut6 20 of 4 0.30Down
Tubule2 00 of 4 0.10Down
Hindgut14 21 of 4 0.70None
Heart4 10 of 4 0.23Down
Fat body5 31 of 4 0.26Down
Ovary20 14 of 4 1.00None
Testis21 34 of 4 1.00None
Male accessory glands18 24 of 4 0.90None
Virgin spermatheca4 00 of 4 0.23Down
Mated spermatheca2 10 of 4 0.11Down
Adult carcass9 30 of 4 0.50Down
Larval CNS7 11 of 4 0.38Down
Larval Salivary gland16 32 of 4 0.78None
Larval midgut10 20 of 4 0.49Down
Larval tubule10 20 of 4 0.50Down
Larval hindgut11 32 of 4 0.55None
Larval fat body27 21 of 4 1.30None
Larval trachea4 30 of 4 0.22Down
Larval carcass22 22 of 4 1.06None
S2 cells (growing)6 11 of 4 0.32Down
Whole fly20 24 of 4



/// Eb1 (CR40354 /// Eb1):

Annotation Number : CG40354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027066 /// FBgn0058354
Gbrowse : chr3LHet:687536-688161 (+) // 100.0 // /// chr2R:2640168-2642313 (+) // 94.04 //
Probeset : 1626214_s_at
Accessions : protein= NP_001015225; /// NP_001015226; /// NP_610233; /// NP_724495; /// NP_724496; /// NP_724497; /// NP_995752;, nucleotide= NM_001015225; /// NM_001015226; /// NM_136389; /// NM_165487; /// NM_165488; /// NM_165489; /// NM_206030;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005874 // microtubule // inferred from direct assay /// 0005875
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from ele
FlyMine data for FBgn0027066 /// FBgn0058354.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 14 of 4 1.10None
Head65 84 of 4 0.60Down
Eye50 44 of 4 0.45Down
Thoracicoabdominal ganglion64 84 of 4 0.60Down
Salivary gland25 62 of 4 0.23Down
Crop139 124 of 4 1.30None
Midgut47 14 of 4 0.40Down
Tubule9 00 of 4 0.10Down
Hindgut93 44 of 4 0.80None
Heart32 34 of 4 0.29Down
Fat body23 73 of 4 0.21Down
Ovary159 64 of 4 1.40Up
Testis382 294 of 4 3.40Up
Male accessory glands37 50 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.05Down
Mated spermatheca6 10 of 4 0.06Down
Adult carcass36 32 of 4 0.30Down
Larval CNS156 214 of 4 1.41Up
Larval Salivary gland140 194 of 4 1.27None
Larval midgut22 30 of 4 0.20Down
Larval tubule83 74 of 4 0.70None
Larval hindgut77 24 of 4 0.69Down
Larval fat body215 174 of 4 1.90Up
Larval trachea85 124 of 4 0.77None
Larval carcass129 244 of 4 1.17None
S2 cells (growing)387 134 of 4 3.49Up
Whole fly111 94 of 4

Looking for CG40354-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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