FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4039-RA through 18771 annotations produced 1 hits

Minichromosome maintenance 6 (Mcm6):

Annotation Number : CG4039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025815
Gbrowse : chrX:6568421-6571205 (+) // 100.0 //
Probeset : 1638575_at
Accessions : protein= NP_511065;, nucleotide= NM_078510;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00056
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0025815.
Homophila reports that CG4039 is a close match (0) to human gene MCM6 (NP_005906), a gene associated with Lactase persistance/nonpersistance, 223100 (3);[Tall stature, susceptibility to], 606255 (3).
BioGrid reports that CG4039 interacts with Dmel CR32865 .
TRiP has 1 RNAi stocks for FBgn0025815 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025815 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.10	Down
Head	29 ± 2	4 of 4	0.10	Down
Eye	31 ± 1	4 of 4	0.10	Down
Thoracicoabdominal ganglion	26 ± 1	4 of 4	0.10	Down
Salivary gland	23 ± 1	4 of 4	0.07	Down
Crop	37 ± 3	4 of 4	0.10	Down
Midgut	36 ± 2	4 of 4	0.10	Down
Tubule	37 ± 8	4 of 4	0.10	Down
Hindgut	29 ± 2	4 of 4	0.10	Down
Heart	14 ± 0	4 of 4	0.05	Down
Fat body	32 ± 10	4 of 4	0.10	Down
Ovary	728 ± 13	4 of 4	2.30	Up
Testis	30 ± 3	4 of 4	0.10	Down
Male accessory glands	67 ± 10	4 of 4	0.20	Down
Virgin spermatheca	32 ± 1	4 of 4	0.10	Down
Mated spermatheca	42 ± 4	4 of 4	0.14	Down
Adult carcass	40 ± 8	4 of 4	0.10	Down
Larval CNS	745 ± 38	4 of 4	2.38	Up
Larval Salivary gland	220 ± 15	4 of 4	0.71	Down
Larval midgut	35 ± 3	4 of 4	0.11	Down
Larval tubule	30 ± 1	4 of 4	0.10	Down
Larval hindgut	76 ± 7	4 of 4	0.24	Down
Larval fat body	31 ± 4	4 of 4	0.10	Down
Larval trachea	250 ± 43	4 of 4	0.80	None
Larval carcass	112 ± 3	4 of 4	0.36	Down
S2 cells (growing)	666 ± 36	4 of 4	2.13	Up
Whole fly	312 ± 17	4 of 4

Looking for CG4039-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720