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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG40411-RD through 18771 annotations produced 1 hits



poly(ADP-ribose) polymerase (Parp):

Annotation Number : CG40411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010247
Gbrowse : chr3RHet:1768645-2027212 (+) // 100.0 //
Probeset : 1634141_a_at
Accessions : protein= NP_001104452;, nucleotide= NM_001110982;
Pathway : DNA-dependent // traceable author statement /// 0006471 // protein ADP-ribosylation // inferred from mutant phenotype /
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0010247.
BioGrid reports that CG40411 interacts with CG8416 .
TRiP has 3 RNAi stocks for FBgn0010247 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 2.90Up
Head8 ± 12 of 4 2.50Up
Eye2 ± 00 of 4 0.79None
Thoracicoabdominal ganglion15 ± 14 of 4 4.30Up
Salivary gland5 ± 20 of 4 1.44None
Crop1 ± 00 of 4 0.40None
Midgut4 ± 10 of 4 1.20None
Tubule4 ± 00 of 4 1.20Up
Hindgut4 ± 11 of 4 1.20None
Heart1 ± 00 of 4 0.53None
Fat body7 ± 22 of 4 2.15None
Ovary2 ± 02 of 4 0.70None
Testis2 ± 01 of 4 0.60None
Male accessory glands8 ± 20 of 4 2.20None
Virgin spermatheca7 ± 23 of 4 2.10None
Mated spermatheca4 ± 11 of 4 1.17None
Adult carcass4 ± 10 of 4 1.30None
Larval CNS9 ± 22 of 4 2.50Up
Larval Salivary gland4 ± 10 of 4 1.24None
Larval midgut4 ± 10 of 4 1.24None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut6 ± 13 of 4 1.65None
Larval fat body6 ± 12 of 4 1.80None
Larval trachea3 ± 31 of 4 1.06None
Larval carcass3 ± 10 of 4 1.01None
S2 cells (growing)2 ± 00 of 4 0.76None
Whole fly3 ± 10 of 4

Looking for CG40411-RD. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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