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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4043-RA through 18771 annotations produced 1 hits



Rrp46 (Rrp46):

Annotation Number : CG4043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037815
Gbrowse : chr3R:6239022-6239968 (+) // 100.0 //
Probeset : 1638292_at
Accessions : protein= NP_650001;, nucleotide= NM_141744;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0000175 // 3'-5'-exorib
FlyMine data for FBgn0037815.
VDRC has 2 RNAi stocks for FBgn0037815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 14 of 4 0.30Down
Head51 ± 04 of 4 0.50Down
Eye51 ± 44 of 4 0.46Down
Thoracicoabdominal ganglion36 ± 24 of 4 0.30Down
Salivary gland88 ± 74 of 4 0.79None
Crop77 ± 14 of 4 0.70None
Midgut95 ± 34 of 4 0.90None
Tubule57 ± 114 of 4 0.50Down
Hindgut62 ± 44 of 4 0.60Down
Heart51 ± 64 of 4 0.46Down
Fat body72 ± 154 of 4 0.65Down
Ovary157 ± 24 of 4 1.40Up
Testis22 ± 14 of 4 0.20Down
Male accessory glands187 ± 104 of 4 1.70Up
Virgin spermatheca87 ± 84 of 4 0.78None
Mated spermatheca126 ± 84 of 4 1.13None
Adult carcass72 ± 74 of 4 0.70Down
Larval CNS161 ± 94 of 4 1.44Up
Larval Salivary gland131 ± 44 of 4 1.17None
Larval midgut52 ± 64 of 4 0.47Down
Larval tubule41 ± 34 of 4 0.40Down
Larval hindgut75 ± 44 of 4 0.67None
Larval fat body32 ± 34 of 4 0.30Down
Larval trachea159 ± 314 of 4 1.42None
Larval carcass109 ± 184 of 4 0.98None
S2 cells (growing)165 ± 64 of 4 1.48Up
Whole fly112 ± 124 of 4

Looking for CG4043-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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