FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG40477-RA through 18771 annotations produced 1 hits

Calcium activated protein for secretion (Caps):

Annotation Number : CG40477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053653
Gbrowse : chr4:1236895-1252495 (+) // 99.81 //
Probeset : 1628675_at
Accessions : protein= NP_001027029; /// NP_001027030; /// NP_001027031;, nucleotide= NM_001031858; /// NM_001031859; /// NM_001031860;
Pathway : glutamatergic // inferred from mutant phenotype /// 0045956 // positive regulation of calcium ion-dependent exocytosis
Interpro : 0008021 // synaptic vesicle // non-traceable author statement /// 0016020 // membrane // inferred from electronic annota
FlyMine data for FBgn0053653.
TRiP has 1 RNAi stocks for FBgn0053653 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053653 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	334 ± 9	4 of 4	23.00	Up
Head	64 ± 13	4 of 4	4.40	Up
Eye	33 ± 5	4 of 4	2.34	Up
Thoracicoabdominal ganglion	208 ± 40	4 of 4	14.40	Up
Salivary gland	20 ± 4	1 of 4	1.41	None
Crop	2 ± 1	0 of 4	0.20	Down
Midgut	9 ± 1	1 of 4	0.60	None
Tubule	10 ± 0	1 of 4	0.70	Down
Hindgut	5 ± 1	0 of 4	0.40	Down
Heart	5 ± 0	1 of 4	0.37	Down
Fat body	9 ± 2	2 of 4	0.64	None
Ovary	5 ± 1	1 of 4	0.40	Down
Testis	15 ± 2	4 of 4	1.10	None
Male accessory glands	22 ± 0	3 of 4	1.50	Up
Virgin spermatheca	6 ± 1	1 of 4	0.46	Down
Mated spermatheca	5 ± 2	2 of 4	0.40	Down
Adult carcass	14 ± 2	1 of 4	1.00	None
Larval CNS	73 ± 5	4 of 4	5.03	Up
Larval Salivary gland	4 ± 2	0 of 4	0.31	Down
Larval midgut	8 ± 1	0 of 4	0.60	None
Larval tubule	12 ± 1	3 of 4	0.80	None
Larval hindgut	5 ± 0	2 of 4	0.39	Down
Larval fat body	7 ± 1	0 of 4	0.50	Down
Larval trachea	7 ± 2	1 of 4	0.49	Down
Larval carcass	3 ± 1	0 of 4	0.25	Down
S2 cells (growing)	5 ± 0	0 of 4	0.39	Down
Whole fly	14 ± 2	3 of 4

Looking for CG40477-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720