Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG40498-RA through 18771 annotations produced 1 hits



(CG40498):

Annotation Number : CG40498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0069969
Gbrowse : chr2RHet:52142-54249 (-) // 100.0 //
Probeset : 1634993_at
Accessions : protein= NP_001104342;, nucleotide= NM_001110872;
FlyMine data for FBgn0069969.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1338 ± 474 of 436.80Up
Head338 ± 234 of 4 9.30Up
Eye273 ± 164 of 4 7.53Up
Thoracicoabdominal ganglion891 ± 454 of 424.50Up
Salivary gland2 ± 10 of 4 0.06Down
Crop1 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.13Down
Fat body0 ± 00 of 4 0.02Down
Ovary4 ± 10 of 4 0.10Down
Testis6 ± 11 of 4 0.20Down
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass15 ± 22 of 4 0.40Down
Larval CNS293 ± 274 of 4 8.06Up
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body7 ± 00 of 4 0.20Down
Larval trachea5 ± 30 of 4 0.16Down
Larval carcass3 ± 10 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly36 ± 54 of 4

Looking for CG40498-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime