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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4050-RA through 18771 annotations produced 1 hits



(CG4050):

Annotation Number : CG4050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020312
Gbrowse : chr2R:17011232-17015995 (-) // 100.0 //
Probeset : 1635587_s_at
Accessions : protein= NP_477246; /// NP_726030;, nucleotide= NM_057898; /// NM_166426;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation /// 0016262 // protein N-acetylglucosaminyltransferase activit
FlyMine data for FBgn0020312.
BDGP gene expression has embryonic in situ data for CG4050: 16 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0020312 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 174 of 4 2.50Up
Head66 34 of 4 1.00None
Eye55 04 of 4 0.82Down
Thoracicoabdominal ganglion143 54 of 4 2.10Up
Salivary gland93 94 of 4 1.36None
Crop71 44 of 4 1.00None
Midgut60 14 of 4 0.90None
Tubule92 44 of 4 1.30Up
Hindgut57 24 of 4 0.80None
Heart65 44 of 4 0.96None
Fat body44 24 of 4 0.66Down
Ovary174 44 of 4 2.60Up
Testis29 24 of 4 0.40Down
Male accessory glands111 84 of 4 1.60Up
Virgin spermatheca71 34 of 4 1.05None
Mated spermatheca83 54 of 4 1.22None
Adult carcass47 23 of 4 0.70Down
Larval CNS297 204 of 4 4.35Up
Larval Salivary gland162 44 of 4 2.37Up
Larval midgut60 54 of 4 0.88None
Larval tubule91 54 of 4 1.30Up
Larval hindgut108 34 of 4 1.58Up
Larval fat body60 24 of 4 0.90None
Larval trachea169 234 of 4 2.48Up
Larval carcass94 44 of 4 1.39Up
S2 cells (growing)344 144 of 4 5.03Up
Whole fly68 34 of 4

Looking for CG4050-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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