FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4059-RB through 18771 annotations produced 2 hits

Ftz interacting protein 1 (ftz-f1):

Annotation Number : CG4059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001078
Gbrowse : chr3L:18745013-18791831 (-) // 100.0 //
Probeset : 1624520_a_at
Accessions : protein= NP_524143; /// NP_730359;, nucleotide= NM_079419; /// NM_168775;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007365 // periodic partitioning // inferred from mutant phenotype
FlyMine data for FBgn0001078.
Homophila reports that CG4059 is a close match (8e-17) to human gene ESCS;NR2E3;PNR (NP_057430), a gene associated with Enhanced S-cone syndrome, 268100 (3);Retinitis pigmentosa-37, 611131 (3).
BioGrid reports that CG4059 interacts with CG4918 CG5067 CG5431 CG5823 CG5893 CG7808 CG7992 CG8280 CG8495 CG11491 CG18389 CG9375 CG5206 CG18085 .
TRiP has 2 RNAi stocks for FBgn0001078 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001078 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	159 ± 5	4 of 4	1.30	None
Head	39 ± 5	4 of 4	0.30	Down
Eye	34 ± 7	4 of 4	0.28	Down
Thoracicoabdominal ganglion	75 ± 4	4 of 4	0.60	Down
Salivary gland	26 ± 1	4 of 4	0.22	Down
Crop	32 ± 3	4 of 4	0.30	Down
Midgut	41 ± 4	4 of 4	0.30	Down
Tubule	33 ± 1	4 of 4	0.30	Down
Hindgut	44 ± 4	4 of 4	0.40	Down
Heart	36 ± 2	4 of 4	0.30	Down
Fat body	41 ± 10	4 of 4	0.34	Down
Ovary	544 ± 8	4 of 4	4.50	Up
Testis	11 ± 0	4 of 4	0.10	Down
Male accessory glands	38 ± 2	4 of 4	0.30	Down
Virgin spermatheca	24 ± 3	4 of 4	0.20	Down
Mated spermatheca	24 ± 0	4 of 4	0.20	Down
Adult carcass	31 ± 1	4 of 4	0.30	Down
Larval CNS	49 ± 4	4 of 4	0.41	Down
Larval Salivary gland	25 ± 1	4 of 4	0.21	Down
Larval midgut	16 ± 1	4 of 4	0.13	Down
Larval tubule	9 ± 2	3 of 4	0.10	Down
Larval hindgut	24 ± 3	4 of 4	0.20	Down
Larval fat body	8 ± 1	3 of 4	0.10	Down
Larval trachea	46 ± 4	4 of 4	0.38	Down
Larval carcass	24 ± 2	4 of 4	0.20	Down
S2 cells (growing)	114 ± 4	4 of 4	0.94	None
Whole fly	122 ± 6	4 of 4

():

Annotation Number : LD11885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001078
Gbrowse : chr3L:18793741-18794395 (-) // 99.24 //
Probeset : 1640821_at
Accessions : protein= , nucleotide=
Pathway : DNA-dependent // inferred from electronic annotation /// 0007365 // periodic partitioning // inferred from mutant pheno
Interpro : heterochronic // traceable author statement /// 0042048 // olfactory behavior // inferred from mutant phenotype /// 004
FlyMine data for FBgn0001078.
TRiP has 2 RNAi stocks for FBgn0001078 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001078 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	339 ± 22	4 of 4	7.00	Up
Head	37 ± 10	4 of 4	0.80	None
Eye	143 ± 28	4 of 4	2.95	Up
Thoracicoabdominal ganglion	177 ± 15	4 of 4	3.60	Up
Salivary gland	32 ± 8	2 of 4	0.66	None
Crop	59 ± 5	4 of 4	1.20	None
Midgut	67 ± 3	4 of 4	1.40	None
Tubule	200 ± 14	4 of 4	4.10	Up
Hindgut	107 ± 20	4 of 4	2.20	None
Heart	92 ± 5	4 of 4	1.89	Up
Fat body	30 ± 11	3 of 4	0.63	None
Ovary	135 ± 1	4 of 4	2.80	Up
Testis	18 ± 2	4 of 4	0.40	Down
Male accessory glands	82 ± 16	4 of 4	1.70	None
Virgin spermatheca	185 ± 14	4 of 4	3.81	Up
Mated spermatheca	176 ± 11	4 of 4	3.62	Up
Adult carcass	45 ± 14	3 of 4	0.90	None
Larval CNS	29 ± 9	4 of 4	0.60	None
Larval Salivary gland	23 ± 2	1 of 4	0.49	None
Larval midgut	15 ± 1	1 of 4	0.32	Down
Larval tubule	17 ± 1	4 of 4	0.40	Down
Larval hindgut	20 ± 5	4 of 4	0.41	Down
Larval fat body	7 ± 1	0 of 4	0.20	Down
Larval trachea	117 ± 22	4 of 4	2.41	Up
Larval carcass	13 ± 2	1 of 4	0.27	Down
S2 cells (growing)	34 ± 5	4 of 4	0.71	None
Whole fly	48 ± 9	4 of 4

Looking for CG4059-RB. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720