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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4067-RB through 18771 annotations produced 1 hits



Pugilist (pug):

Annotation Number : CG4067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020385
Gbrowse : chr3R:6522239-6529011 (+) // 100.0 //
Probeset : 1637444_s_at
Accessions : protein= NP_001014614; /// NP_477254; /// NP_731489; /// NP_731490;, nucleotide= NM_001014614; /// NM_057906; /// NM_169350; /// NM_169351;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0020385.
Homophila reports that CG4067 is a close match (0) to human gene MTHFC;MTHFD (NP_005947), a gene associated with {Abruptio placentae, susceptibility to} (3);{Spina bifida, folate-sensitive, susceptibility to}, 601634 (3).
VDRC has 2 RNAi stocks for FBgn0020385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 34 of 4 0.10Down
Head883 454 of 4 2.90Up
Eye323 754 of 4 1.08None
Thoracicoabdominal ganglion56 44 of 4 0.20Down
Salivary gland49 14 of 4 0.16Down
Crop93 24 of 4 0.30Down
Midgut170 84 of 4 0.60Down
Tubule237 114 of 4 0.80Down
Hindgut160 84 of 4 0.50Down
Heart961 574 of 4 3.20Up
Fat body2042 1574 of 4 6.79Up
Ovary112 54 of 4 0.40Down
Testis67 24 of 4 0.20Down
Male accessory glands28 24 of 4 0.10Down
Virgin spermatheca4394 1614 of 414.62Up
Mated spermatheca2730 2344 of 4 9.08Up
Adult carcass1298 334 of 4 4.30Up
Larval CNS38 24 of 4 0.13Down
Larval Salivary gland81 64 of 4 0.27Down
Larval midgut284 214 of 4 0.95None
Larval tubule60 34 of 4 0.20Down
Larval hindgut433 414 of 4 1.44Up
Larval fat body4044 4384 of 413.50Up
Larval trachea52 84 of 4 0.17Down
Larval carcass69 54 of 4 0.23Down
S2 cells (growing)24 14 of 4 0.08Down
Whole fly300 194 of 4

Looking for CG4067-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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