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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4070-RA through 18771 annotations produced 1 hits



Tis11 homolog (Tis11):

Annotation Number : CG4070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011837
Gbrowse : chrX:12553444-12573719 (+) // 100.0 //
Probeset : 1623863_a_at
Accessions : protein= NP_511141; /// NP_727633;, nucleotide= NM_078586; /// NM_167333;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable autho
FlyMine data for FBgn0011837.
BioGrid reports that CG4070 interacts with CG8997 .
TRiP has 1 RNAi stocks for FBgn0011837 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 54 of 4 0.20Down
Head203 114 of 4 0.80None
Eye194 114 of 4 0.76Down
Thoracicoabdominal ganglion85 64 of 4 0.30Down
Salivary gland190 294 of 4 0.75None
Crop345 94 of 4 1.40Up
Midgut293 94 of 4 1.20None
Tubule458 314 of 4 1.80Up
Hindgut283 94 of 4 1.10None
Heart464 114 of 4 1.83Up
Fat body441 904 of 4 1.74Up
Ovary457 54 of 4 1.80Up
Testis89 84 of 4 0.40Down
Male accessory glands261 84 of 4 1.00None
Virgin spermatheca747 324 of 4 2.94Up
Mated spermatheca566 154 of 4 2.23Up
Adult carcass294 674 of 4 1.20None
Larval CNS162 124 of 4 0.64Down
Larval Salivary gland112 84 of 4 0.44Down
Larval midgut315 214 of 4 1.24None
Larval tubule291 124 of 4 1.10None
Larval hindgut414 154 of 4 1.63Up
Larval fat body525 124 of 4 2.10Up
Larval trachea779 394 of 4 3.06Up
Larval carcass185 124 of 4 0.73Down
S2 cells (growing)376 74 of 4 1.48Up
Whole fly254 194 of 4

Looking for CG4070-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime