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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4076-RA through 18771 annotations produced 1 hits



Nufip (Nufip):

Annotation Number : CG4076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036812
Gbrowse : chr3L:18739703-18741437 (-) // 100.0 //
Probeset : 1629964_at
Accessions : protein= NP_649058;, nucleotide= NM_140801;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003729 // mRNA binding // non-traceable author statement /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0036812.
BioGrid reports that CG4076 interacts with CG8204 CG9631 .
VDRC has 2 RNAi stocks for FBgn0036812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 34 of 4 0.50Down
Head27 23 of 4 0.40Down
Eye19 24 of 4 0.28Down
Thoracicoabdominal ganglion29 24 of 4 0.40Down
Salivary gland32 10 of 4 0.47Down
Crop31 24 of 4 0.50Down
Midgut24 30 of 4 0.40Down
Tubule20 21 of 4 0.30Down
Hindgut23 23 of 4 0.30Down
Heart22 14 of 4 0.33Down
Fat body29 54 of 4 0.43Down
Ovary199 24 of 4 2.90Up
Testis21 04 of 4 0.30Down
Male accessory glands34 43 of 4 0.50Down
Virgin spermatheca30 24 of 4 0.44Down
Mated spermatheca34 34 of 4 0.50Down
Adult carcass30 11 of 4 0.40Down
Larval CNS64 64 of 4 0.94None
Larval Salivary gland47 64 of 4 0.68Down
Larval midgut20 32 of 4 0.30Down
Larval tubule19 10 of 4 0.30Down
Larval hindgut24 33 of 4 0.36Down
Larval fat body18 30 of 4 0.30Down
Larval trachea54 54 of 4 0.80Down
Larval carcass40 64 of 4 0.59Down
S2 cells (growing)53 14 of 4 0.79Down
Whole fly68 24 of 4

Looking for CG4076-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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