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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4079-RA through 18771 annotations produced 1 hits



chr2L:9762360-9763244 (-) // 100.0 // (Gdi-related /// TBP-associated factor 30kD subunit beta):

Annotation Number : CG4079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636486_at
Accessions : protein= , nucleotide= NP_523524; /// NP_723484;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
BioGrid reports that CG4079 interacts with CG4185 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 34 of 4 0.80Down
Head70 34 of 4 0.50Down
Eye102 94 of 4 0.73Down
Thoracicoabdominal ganglion107 24 of 4 0.80Down
Salivary gland127 64 of 4 0.91None
Crop94 24 of 4 0.70Down
Midgut79 54 of 4 0.60Down
Tubule60 14 of 4 0.40Down
Hindgut81 54 of 4 0.60Down
Heart82 54 of 4 0.59Down
Fat body68 94 of 4 0.49Down
Ovary209 24 of 4 1.50Up
Testis66 64 of 4 0.50Down
Male accessory glands157 74 of 4 1.10None
Virgin spermatheca74 24 of 4 0.53Down
Mated spermatheca87 24 of 4 0.62Down
Adult carcass64 74 of 4 0.50Down
Larval CNS188 84 of 4 1.34Up
Larval Salivary gland186 54 of 4 1.32Up
Larval midgut68 84 of 4 0.48Down
Larval tubule109 44 of 4 0.80Down
Larval hindgut83 24 of 4 0.59Down
Larval fat body85 84 of 4 0.60Down
Larval trachea148 134 of 4 1.05None
Larval carcass99 14 of 4 0.71Down
S2 cells (growing)142 54 of 4 1.01None
Whole fly141 24 of 4

Looking for CG4079-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime