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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4083-RA through 18771 annotations produced 1 hits

Mo25 (Mo25):

Annotation Number : CG4083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017572
Gbrowse : chr3L:16606317-16608572 (-) // 100.0 //
Probeset : 1628281_at
Accessions : protein= NP_524117;, nucleotide= NM_079393;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0017572.
BDGP gene expression has embryonic in situ data for Mo25: 12 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0017572 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain437 24 of 4 2.40Up
Head358 134 of 4 2.00Up
Eye547 314 of 4 2.99Up
Thoracicoabdominal ganglion404 164 of 4 2.20Up
Salivary gland478 164 of 4 2.61Up
Crop336 74 of 4 1.80Up
Midgut287 34 of 4 1.60Up
Tubule302 94 of 4 1.70Up
Hindgut329 84 of 4 1.80Up
Heart261 214 of 4 1.42Up
Fat body251 214 of 4 1.37Up
Ovary206 54 of 4 1.10Up
Testis60 54 of 4 0.30Down
Male accessory glands294 94 of 4 1.60Up
Virgin spermatheca258 84 of 4 1.41Up
Mated spermatheca246 104 of 4 1.34Up
Adult carcass245 44 of 4 1.30Up
Larval CNS456 244 of 4 2.49Up
Larval Salivary gland680 134 of 4 3.71Up
Larval midgut362 134 of 4 1.98Up
Larval tubule496 94 of 4 2.70Up
Larval hindgut502 94 of 4 2.74Up
Larval fat body381 274 of 4 2.10Up
Larval trachea340 424 of 4 1.86Up
Larval carcass349 64 of 4 1.91Up
S2 cells (growing)470 34 of 4 2.57Up
Whole fly183 34 of 4

Looking for CG4083-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime