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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4084-RA through 18771 annotations produced 1 hits



chr2R:19592959-19599111 (-) // 100.0 // (lethal(2) neighbour of 1(2)tid):

Annotation Number : CG4084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641244_at
Accessions : protein= , nucleotide= NP_523829;
Pathway : 0007275 // multicellular organismal development // inferred from electronic annotation
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for full length.
Homophila reports that CG4084 is a close match (2e-56) to human gene ALG3;NOT56L;CDGS4 (NP_005778), a gene associated with Congenital disorder of glycosylation, type Id, 601110 (3).
BioGrid reports that CG4084 interacts with CG8316 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 24 of 4 1.00None
Head62 34 of 4 0.90None
Eye96 44 of 4 1.41Up
Thoracicoabdominal ganglion60 24 of 4 0.90None
Salivary gland172 114 of 4 2.52Up
Crop58 24 of 4 0.90None
Midgut103 64 of 4 1.50Up
Tubule54 34 of 4 0.80Down
Hindgut60 44 of 4 0.90None
Heart63 64 of 4 0.93None
Fat body68 74 of 4 1.00None
Ovary110 64 of 4 1.60Up
Testis52 24 of 4 0.80Down
Male accessory glands92 34 of 4 1.30Up
Virgin spermatheca54 34 of 4 0.79Down
Mated spermatheca48 34 of 4 0.70Down
Adult carcass67 34 of 4 1.00None
Larval CNS79 34 of 4 1.16Up
Larval Salivary gland175 34 of 4 2.57Up
Larval midgut122 64 of 4 1.79Up
Larval tubule78 14 of 4 1.10Up
Larval hindgut72 54 of 4 1.06None
Larval fat body74 64 of 4 1.10None
Larval trachea69 24 of 4 1.02None
Larval carcass61 54 of 4 0.89None
S2 cells (growing)254 74 of 4 3.71Up
Whole fly68 34 of 4

Looking for CG4084-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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