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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4087-RA through 18771 annotations produced 1 hits



Ribosomal-protein-A2 (RpLP1):

Annotation Number : CG4087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002593
Gbrowse : chr2L:419930-420706 (+) // 100.0 //
Probeset : 1623606_at
Accessions : protein= NP_476630;, nucleotide= NM_057282;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0002593.
BioGrid reports that CG4087 interacts with CG6459 CG7340 CG7490 CG5441 CG5623 CG5771 CG6950 CG8231 CG8361 CG8479 CG8548 CG8942 CG8977 CG9173 CG9572 CG9977 CG18412 CG31094 .
VDRC has 3 RNAi stocks for FBgn0002593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3150 ± 534 of 4 0.60Down
Head5285 ± 2004 of 4 1.10None
Eye7238 ± 1754 of 4 1.48Up
Thoracicoabdominal ganglion3963 ± 574 of 4 0.80Down
Salivary gland15835 ± 4314 of 4 3.23Up
Crop7415 ± 4784 of 4 1.50Up
Midgut6353 ± 1504 of 4 1.30Up
Tubule5425 ± 964 of 4 1.10Up
Hindgut5926 ± 1424 of 4 1.20Up
Heart7860 ± 5664 of 4 1.60Up
Fat body6383 ± 8424 of 4 1.30Up
Ovary4224 ± 474 of 4 0.90None
Testis1567 ± 504 of 4 0.30Down
Male accessory glands10928 ± 3154 of 4 2.20Up
Virgin spermatheca6078 ± 2184 of 4 1.24Up
Mated spermatheca6140 ± 2034 of 4 1.25Up
Adult carcass7340 ± 4054 of 4 1.50Up
Larval CNS3109 ± 2474 of 4 0.63Down
Larval Salivary gland9909 ± 4954 of 4 2.02Up
Larval midgut5454 ± 1144 of 4 1.11None
Larval tubule6544 ± 1454 of 4 1.30Up
Larval hindgut5027 ± 654 of 4 1.03None
Larval fat body10449 ± 11694 of 4 2.10Up
Larval trachea7233 ± 3684 of 4 1.48Up
Larval carcass5442 ± 4084 of 4 1.11None
S2 cells (growing)5236 ± 1104 of 4 1.07None
Whole fly4900 ± 2764 of 4

Looking for CG4087-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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