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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4090-RA through 18771 annotations produced 1 hits



Mucin related 89F (Mur89F):

Annotation Number : CG4090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038492
Gbrowse : chr3R:12979241-12985670 (-) // 100.0 //
Probeset : 1629343_at
Accessions : protein= NP_650611;, nucleotide= NM_142354;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0038492.
VDRC has 3 RNAi stocks for FBgn0038492 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.50None
Head4 10 of 4 1.40None
Eye7 10 of 4 2.21None
Thoracicoabdominal ganglion7 10 of 4 2.40Up
Salivary gland9 20 of 4 3.08None
Crop10 10 of 4 3.20Up
Midgut7 10 of 4 2.50Up
Tubule5 00 of 4 1.70Up
Hindgut6 10 of 4 2.00None
Heart2 00 of 4 0.76None
Fat body11 20 of 4 3.59Up
Ovary5 02 of 4 1.80Up
Testis6 10 of 4 2.20None
Male accessory glands11 20 of 4 3.50None
Virgin spermatheca3 00 of 4 1.17None
Mated spermatheca7 11 of 4 2.32Up
Adult carcass3 00 of 4 1.20None
Larval CNS4 11 of 4 1.52None
Larval Salivary gland6 11 of 4 2.17None
Larval midgut4 10 of 4 1.47None
Larval tubule5 10 of 4 1.70None
Larval hindgut7 01 of 4 2.47Up
Larval fat body15 43 of 4 4.70None
Larval trachea10 32 of 4 3.20Up
Larval carcass102 324 of 432.34None
S2 cells (growing)7 12 of 4 2.28Up
Whole fly3 00 of 4

Looking for CG4090-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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