FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4094-RA through 18771 annotations produced 1 hits

lethal (1) G0255 (l(1)G0255):

Annotation Number : CG4094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028336
Gbrowse : chrX:6572498-6575887 (+) // 100.0 //
Probeset : 1635025_a_at
Accessions : protein= NP_572339; /// NP_727108;, nucleotide= NM_132111; /// NM_167081;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // infer
FlyMine data for FBgn0028336.
Homophila reports that CG4094 is a close match (0) to human gene FH (NP_000134), a gene associated with Fumarase deficiency, 606812 (3);Leiomyomatosis and renal cell cancer, 605839 (3);Multiple cutaneous and uterine leiomyomata, 150800 (3).
BioGrid reports that CG4094 interacts with CG6741 .
VDRC has 3 RNAi stocks for FBgn0028336 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	743 ± 16	4 of 4	1.20	None
Head	639 ± 28	4 of 4	1.00	None
Eye	500 ± 13	4 of 4	0.78	Down
Thoracicoabdominal ganglion	734 ± 10	4 of 4	1.10	None
Salivary gland	750 ± 23	4 of 4	1.17	None
Crop	655 ± 28	4 of 4	1.00	None
Midgut	413 ± 17	4 of 4	0.60	Down
Tubule	1396 ± 53	4 of 4	2.20	Up
Hindgut	1169 ± 43	4 of 4	1.80	Up
Heart	1105 ± 29	4 of 4	1.72	Up
Fat body	956 ± 130	4 of 4	1.49	Up
Ovary	608 ± 9	4 of 4	0.90	None
Testis	49 ± 2	4 of 4	0.10	Down
Male accessory glands	343 ± 12	4 of 4	0.50	Down
Virgin spermatheca	790 ± 32	4 of 4	1.23	Up
Mated spermatheca	741 ± 62	4 of 4	1.15	None
Adult carcass	1388 ± 37	4 of 4	2.20	Up
Larval CNS	539 ± 16	4 of 4	0.84	None
Larval Salivary gland	446 ± 27	4 of 4	0.70	Down
Larval midgut	651 ± 51	4 of 4	1.01	None
Larval tubule	522 ± 53	4 of 4	0.80	None
Larval hindgut	1065 ± 85	4 of 4	1.66	Up
Larval fat body	424 ± 42	4 of 4	0.70	Down
Larval trachea	788 ± 47	4 of 4	1.23	Up
Larval carcass	1157 ± 95	4 of 4	1.80	Up
S2 cells (growing)	557 ± 15	4 of 4	0.87	None
Whole fly	642 ± 38	4 of 4

Looking for CG4094-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720