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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4097-RA through 18771 annotations produced 1 hits



Proteasome subunit 20S (Pros26):

Annotation Number : CG4097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002284
Gbrowse : chr3L:16602496-16603521 (-) // 100.0 //
Probeset : 1623288_at
Accessions : protein= NP_524115;, nucleotide= NM_079391;
Pathway : 0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elect
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0002284.
BDGP gene expression has embryonic in situ data for Pros26: 11 pix of staining in 12 body parts.
BioGrid reports that CG4097 interacts with CG8066 CG5460 CG3936 CG3329 CG3329 CG3329 CG1945 CG1945 CG8532 CG4166 CG4319 .
TRiP has 1 RNAi stocks for FBgn0002284 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 44 of 4 0.40Down
Head575 194 of 4 0.60Down
Eye414 144 of 4 0.42Down
Thoracicoabdominal ganglion393 124 of 4 0.40Down
Salivary gland459 254 of 4 0.47Down
Crop919 124 of 4 0.90None
Midgut831 294 of 4 0.80Down
Tubule644 344 of 4 0.70Down
Hindgut694 114 of 4 0.70Down
Heart2001 714 of 4 2.04Up
Fat body1985 1684 of 4 2.02Up
Ovary1221 104 of 4 1.20Up
Testis841 184 of 4 0.90Down
Male accessory glands728 644 of 4 0.70Down
Virgin spermatheca544 204 of 4 0.55Down
Mated spermatheca544 324 of 4 0.55Down
Adult carcass1582 374 of 4 1.60Up
Larval CNS941 544 of 4 0.96None
Larval Salivary gland1169 1114 of 4 1.19None
Larval midgut1071 1014 of 4 1.09None
Larval tubule2062 244 of 4 2.10Up
Larval hindgut1047 364 of 4 1.07None
Larval fat body1177 934 of 4 1.20None
Larval trachea996 834 of 4 1.02None
Larval carcass1534 1384 of 4 1.56Up
S2 cells (growing)1064 184 of 4 1.08None
Whole fly981 314 of 4

Looking for CG4097-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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