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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4101-RA through 18771 annotations produced 1 hits



(CG4101):

Annotation Number : CG4101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025558
Gbrowse : chr3L:16605675-16605939 (+) // 100.0 //
Probeset : 1634070_at
Accessions : protein= NP_648908;, nucleotide= NM_140651;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0025558.
VDRC has 1 RNAi stocks for FBgn0025558 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain247 ± 44 of 4 2.90Up
Head117 ± 44 of 4 1.40Up
Eye85 ± 24 of 4 1.01None
Thoracicoabdominal ganglion192 ± 14 of 4 2.30Up
Salivary gland128 ± 74 of 4 1.51Up
Crop121 ± 44 of 4 1.40Up
Midgut60 ± 24 of 4 0.70Down
Tubule46 ± 24 of 4 0.50Down
Hindgut143 ± 44 of 4 1.70Up
Heart120 ± 14 of 4 1.41Up
Fat body62 ± 44 of 4 0.73Down
Ovary94 ± 44 of 4 1.10None
Testis126 ± 64 of 4 1.50Up
Male accessory glands111 ± 34 of 4 1.30Up
Virgin spermatheca88 ± 34 of 4 1.04None
Mated spermatheca130 ± 54 of 4 1.53Up
Adult carcass69 ± 34 of 4 0.80Down
Larval CNS152 ± 44 of 4 1.80Up
Larval Salivary gland120 ± 54 of 4 1.42Up
Larval midgut67 ± 24 of 4 0.79Down
Larval tubule50 ± 24 of 4 0.60Down
Larval hindgut117 ± 44 of 4 1.38Up
Larval fat body85 ± 54 of 4 1.00None
Larval trachea130 ± 74 of 4 1.53Up
Larval carcass110 ± 64 of 4 1.30Up
S2 cells (growing)211 ± 54 of 4 2.48Up
Whole fly85 ± 14 of 4

Looking for CG4101-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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