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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4107-RA through 18771 annotations produced 1 hits



Pcaf (Pcaf):

Annotation Number : CG4107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020388
Gbrowse : chr3L:12514177-12517101 (-) // 100.0 //
Probeset : 1627246_at
Accessions : protein= NP_648586;, nucleotide= NM_140329;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007412 // axon target recognition // inferred from mutant phe
Interpro : 0000124 // SAGA complex // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from elect
FlyMine data for FBgn0020388.
BDGP gene expression has embryonic in situ data for Pcaf: 30 pix of staining in 17 body parts.
BioGrid reports that CG4107 interacts with CG9638 .
TRiP has 2 RNAi stocks for FBgn0020388 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020388 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 84 of 4 1.00None
Head98 24 of 4 0.80Down
Eye70 54 of 4 0.55Down
Thoracicoabdominal ganglion127 24 of 4 1.00None
Salivary gland62 34 of 4 0.50Down
Crop106 14 of 4 0.80Down
Midgut98 104 of 4 0.80None
Tubule126 74 of 4 1.00None
Hindgut99 54 of 4 0.80Down
Heart119 74 of 4 0.94None
Fat body162 244 of 4 1.28None
Ovary244 54 of 4 1.90Up
Testis29 14 of 4 0.20Down
Male accessory glands112 64 of 4 0.90None
Virgin spermatheca242 134 of 4 1.92Up
Mated spermatheca242 74 of 4 1.92Up
Adult carcass121 104 of 4 1.00None
Larval CNS193 34 of 4 1.53Up
Larval Salivary gland90 64 of 4 0.72Down
Larval midgut122 64 of 4 0.97None
Larval tubule164 114 of 4 1.30Up
Larval hindgut98 64 of 4 0.78Down
Larval fat body118 104 of 4 0.90None
Larval trachea127 124 of 4 1.01None
Larval carcass96 44 of 4 0.76Down
S2 cells (growing)167 64 of 4 1.32Up
Whole fly126 34 of 4

Looking for CG4107-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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