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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4122-RA through 18771 annotations produced 1 hits



silver (svr):

Annotation Number : CG4122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004648
Gbrowse : chrX:390510-401910 (+) // 100.0 //
Probeset : 1633733_a_at
Accessions : protein= NP_001138141; /// NP_525032; /// NP_726675; /// NP_788852; /// NP_996319; /// NP_996320; /// NP_996321; /// NP_996322;, nucleotide= NM_001144669; /// NM_080293; /// NM_166846; /// NM_176679; /// NM_206596; /// NM_206597; /// NM_206598; /// NM_206599;
Pathway : engulfment // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // inferred from m
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0004648.
Homophila reports that CG4122 is a close match (2e-75) to human gene CPN;CPN1;SCPN (NP_001299), a gene associated with Carboxypeptidase N deficiency, 212070 (3).
BioGrid reports that CG4122 interacts with CG9083 CG3978 CG6741 .
TRiP has 1 RNAi stocks for FBgn0004648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.80Down
Head32 34 of 4 0.90None
Eye8 20 of 4 0.26Down
Thoracicoabdominal ganglion18 33 of 4 0.50Down
Salivary gland113 154 of 4 3.30Up
Crop49 64 of 4 1.40None
Midgut47 43 of 4 1.40None
Tubule13 20 of 4 0.40Down
Hindgut41 04 of 4 1.20Up
Heart26 24 of 4 0.78None
Fat body81 194 of 4 2.38Up
Ovary52 44 of 4 1.50Up
Testis10 03 of 4 0.30Down
Male accessory glands77 84 of 4 2.30Up
Virgin spermatheca21 30 of 4 0.63Down
Mated spermatheca22 12 of 4 0.66Down
Adult carcass53 53 of 4 1.50Up
Larval CNS26 14 of 4 0.78Down
Larval Salivary gland122 144 of 4 3.56Up
Larval midgut35 23 of 4 1.02None
Larval tubule37 03 of 4 1.10None
Larval hindgut41 34 of 4 1.21None
Larval fat body88 104 of 4 2.60Up
Larval trachea30 74 of 4 0.88None
Larval carcass27 31 of 4 0.79None
S2 cells (growing)116 74 of 4 3.40Up
Whole fly34 14 of 4

Looking for CG4122-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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