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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4125-RA through 18771 annotations produced 1 hits

roughest (rst):

Annotation Number : CG4125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003285
Gbrowse : chrX:2846239-2867865 (-) // 100.0 //
Probeset : 1625366_at
Accessions : protein= NP_525058;, nucleotide= NM_080319;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003285.
BDGP gene expression has embryonic in situ data for rst: 38 pix of staining in 22 body parts.
Homophila reports that CG4125 is a close match (3e-12) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
BioGrid reports that CG4125 interacts with CG3619 CG15437 .
TRiP has 1 RNAi stocks for FBgn0003285 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003285 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 24 of 4 3.50Up
Head50 14 of 4 2.10Up
Eye167 104 of 4 7.07Up
Thoracicoabdominal ganglion90 04 of 4 3.80Up
Salivary gland17 41 of 4 0.73None
Crop10 12 of 4 0.40Down
Midgut2 00 of 4 0.10Down
Tubule15 03 of 4 0.60Down
Hindgut32 24 of 4 1.40None
Heart21 04 of 4 0.91None
Fat body26 44 of 4 1.13None
Ovary64 74 of 4 2.70Up
Testis4 00 of 4 0.20Down
Male accessory glands9 11 of 4 0.40Down
Virgin spermatheca32 54 of 4 1.37None
Mated spermatheca48 94 of 4 2.04None
Adult carcass21 22 of 4 0.90None
Larval CNS269 204 of 411.41Up
Larval Salivary gland5 10 of 4 0.22Down
Larval midgut1 00 of 4 0.08Down
Larval tubule6 12 of 4 0.30Down
Larval hindgut8 13 of 4 0.35Down
Larval fat body7 00 of 4 0.30Down
Larval trachea194 324 of 4 8.23Up
Larval carcass93 94 of 4 3.95Up
S2 cells (growing)0 00 of 4 0.03Down
Whole fly23 34 of 4

Looking for CG4125-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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