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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4132-RA through 18771 annotations produced 1 hits



pkaap (pkaap):

Annotation Number : CG4132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040079
Gbrowse : chr2L:16288291-16291197 (+) // 100.0 //
Probeset : 1640818_at
Accessions : protein= NP_609783;, nucleotide= NM_135939;
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0051018 // protein kinase A binding //
FlyMine data for FBgn0040079.
Homophila reports that CG4132 is a close match (5e-39) to human gene AKAP10 (NP_009133), a gene associated with {Longevity, reduced}, 152430 (3).
VDRC has 2 RNAi stocks for FBgn0040079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain252 34 of 4 2.10Up
Head148 164 of 4 1.20None
Eye90 64 of 4 0.75Down
Thoracicoabdominal ganglion360 54 of 4 3.00Up
Salivary gland120 124 of 4 1.00None
Crop105 44 of 4 0.90None
Midgut35 21 of 4 0.30Down
Tubule35 24 of 4 0.30Down
Hindgut102 24 of 4 0.80Down
Heart78 54 of 4 0.65Down
Fat body81 64 of 4 0.67Down
Ovary188 24 of 4 1.60Up
Testis55 24 of 4 0.50Down
Male accessory glands62 24 of 4 0.50Down
Virgin spermatheca119 74 of 4 0.99None
Mated spermatheca132 14 of 4 1.10None
Adult carcass140 94 of 4 1.20None
Larval CNS150 64 of 4 1.25Up
Larval Salivary gland98 54 of 4 0.81Down
Larval midgut26 31 of 4 0.22Down
Larval tubule28 14 of 4 0.20Down
Larval hindgut98 74 of 4 0.82None
Larval fat body61 44 of 4 0.50Down
Larval trachea282 394 of 4 2.34Up
Larval carcass120 74 of 4 1.00None
S2 cells (growing)171 14 of 4 1.42Up
Whole fly120 54 of 4

Looking for CG4132-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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