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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4133-RA through 18771 annotations produced 1 hits



(CG4133):

Annotation Number : CG4133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031257
Gbrowse : chr2L:455542-458746 (+) // 100.0 //
Probeset : 1631360_at
Accessions : protein= NP_608526;, nucleotide= NM_134682;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0031257.
BDGP gene expression has embryonic in situ data for CG4133: 19 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0031257 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain441 134 of 426.40Up
Head91 64 of 4 5.50Up
Eye75 24 of 4 4.51Up
Thoracicoabdominal ganglion319 54 of 419.10Up
Salivary gland9 20 of 4 0.55None
Crop5 00 of 4 0.30Down
Midgut5 00 of 4 0.30Down
Tubule6 10 of 4 0.40Down
Hindgut4 00 of 4 0.30Down
Heart7 00 of 4 0.42Down
Fat body8 51 of 4 0.49Down
Ovary2 11 of 4 0.20Down
Testis10 14 of 4 0.60Down
Male accessory glands51 44 of 4 3.10Up
Virgin spermatheca7 10 of 4 0.43Down
Mated spermatheca11 11 of 4 0.71None
Adult carcass16 43 of 4 1.00None
Larval CNS262 124 of 415.66Up
Larval Salivary gland8 10 of 4 0.51Down
Larval midgut2 00 of 4 0.13Down
Larval tubule6 11 of 4 0.40Down
Larval hindgut5 00 of 4 0.32Down
Larval fat body8 11 of 4 0.50Down
Larval trachea6 20 of 4 0.36Down
Larval carcass8 10 of 4 0.48Down
S2 cells (growing)16 24 of 4 1.00None
Whole fly16 14 of 4

Looking for CG4133-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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