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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4135-RA through 18771 annotations produced 1 hits



beat-IIb (beat-IIb):

Annotation Number : CG4135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038494
Gbrowse : chr3R:13058481-13073598 (-) // 100.0 //
Probeset : 1628993_at
Accessions : protein= NP_001163635; /// NP_650613;, nucleotide= NM_001170164; /// NM_142356;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038494.
VDRC has 2 RNAi stocks for FBgn0038494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 34 of 419.70Up
Head35 44 of 4 4.20Up
Eye16 14 of 4 1.96Up
Thoracicoabdominal ganglion98 74 of 411.60Up
Salivary gland16 21 of 4 1.87Up
Crop16 24 of 4 2.00None
Midgut5 00 of 4 0.60None
Tubule2 00 of 4 0.30Down
Hindgut7 10 of 4 0.90None
Heart3 11 of 4 0.37None
Fat body6 30 of 4 0.72None
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.20Down
Male accessory glands6 10 of 4 0.80None
Virgin spermatheca1 00 of 4 0.17Down
Mated spermatheca3 00 of 4 0.37None
Adult carcass8 20 of 4 1.00None
Larval CNS28 44 of 4 3.30Up
Larval Salivary gland4 00 of 4 0.52None
Larval midgut5 20 of 4 0.67None
Larval tubule2 00 of 4 0.30None
Larval hindgut2 00 of 4 0.28None
Larval fat body3 20 of 4 0.40None
Larval trachea3 31 of 4 0.37None
Larval carcass4 10 of 4 0.58None
S2 cells (growing)0 00 of 4 0.11Down
Whole fly8 21 of 4

Looking for CG4135-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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