Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4145-RC through 18771 annotations produced 1 hits



"type IV collagen ( alpha-chain"):

Annotation Number : CG4145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:5030136-5037114 (+) // 99.62 //
Probeset : 1630150_s_at
Accessions : protein= , nucleotide= NP_723044; /// NP_723045; /// NP_723046;
Pathway : 0007391 // dorsal closure // traceable author statement
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
FlyMine data for full length.
Homophila reports that CG4145 is a close match (4e-11) to human gene COL11A2;DFNA13;STL3 (NP_542410), a gene associated with Deafness, autosomal dominant 13, 601868 (3);Otospondylomegaepiphyseal dysplasia, 215150 (3);Stickler syndrome, type III, 184840 (3);Weissenbacher-Zweymuller syndrome, 277610 (3).
BioGrid reports that CG4145 interacts with CG2189 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 294 of 4 1.60Up
Head338 204 of 4 1.50Up
Eye103 144 of 4 0.46Down
Thoracicoabdominal ganglion710 554 of 4 3.10Up
Salivary gland15 30 of 4 0.07Down
Crop49 84 of 4 0.20Down
Midgut20 00 of 4 0.10Down
Tubule29 72 of 4 0.10Down
Hindgut64 74 of 4 0.30Down
Heart1899 644 of 4 8.40Up
Fat body1374 1714 of 4 6.08Up
Ovary155 84 of 4 0.70None
Testis44 24 of 4 0.20Down
Male accessory glands39 54 of 4 0.20Down
Virgin spermatheca658 664 of 4 2.91Up
Mated spermatheca1035 704 of 4 4.58Up
Adult carcass606 214 of 4 2.70Up
Larval CNS280 464 of 4 1.24None
Larval Salivary gland126 164 of 4 0.56Down
Larval midgut41 44 of 4 0.18Down
Larval tubule55 74 of 4 0.20Down
Larval hindgut268 374 of 4 1.19None
Larval fat body519 404 of 4 2.30Up
Larval trachea229 64 of 4 1.01None
Larval carcass326 244 of 4 1.44Up
S2 cells (growing)2692 574 of 411.90Up
Whole fly226 274 of 4

Looking for CG4145-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime