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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4148-RA through 18771 annotations produced 1 hits

weckle (wek):

Annotation Number : CG4148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001990
Gbrowse : chr2L:15766474-15768317 (-) // 100.0 //
Probeset : 1623370_at
Accessions : protein= NP_524930;, nucleotide= NM_080191;
Pathway : oocyte
Interpro : germ-line encoded // inferred from mutant phenotype /// 0008063 // Toll signaling pathway // inferred from mutant pheno
FlyMine data for FBgn0001990.
BDGP gene expression has embryonic in situ data for l(2)35Ea: 6 pix of staining in 1 body parts.
Homophila reports that CG4148 is a close match (5e-12) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG4148 interacts with CG7204 CG7386 CG4148 CG5333 CG5837 CG5923 CG6667 CG7992 CG8173 CG8301 .
TRiP has 1 RNAi stocks for FBgn0001990 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001990 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 0.50Down
Head20 12 of 4 0.30Down
Eye22 23 of 4 0.33Down
Thoracicoabdominal ganglion23 23 of 4 0.30Down
Salivary gland57 22 of 4 0.82Down
Crop33 24 of 4 0.50Down
Midgut32 33 of 4 0.50Down
Tubule32 12 of 4 0.50Down
Hindgut22 23 of 4 0.30Down
Heart24 34 of 4 0.36Down
Fat body36 63 of 4 0.52Down
Ovary147 34 of 4 2.10Up
Testis30 24 of 4 0.40Down
Male accessory glands27 42 of 4 0.40Down
Virgin spermatheca20 23 of 4 0.29Down
Mated spermatheca24 14 of 4 0.34Down
Adult carcass32 21 of 4 0.50Down
Larval CNS58 54 of 4 0.84Down
Larval Salivary gland54 14 of 4 0.77Down
Larval midgut28 12 of 4 0.41Down
Larval tubule48 44 of 4 0.70Down
Larval hindgut33 14 of 4 0.47Down
Larval fat body72 54 of 4 1.00None
Larval trachea58 54 of 4 0.83Down
Larval carcass27 23 of 4 0.39Down
S2 cells (growing)64 14 of 4 0.92None
Whole fly70 24 of 4

Looking for CG4148-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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