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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4152-RA through 18771 annotations produced 1 hits



lethal (2) 35Df (l(2)35Df):

Annotation Number : CG4152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001986
Gbrowse : chr2L:15752252-15755905 (+) // 100.0 //
Probeset : 1636986_at
Accessions : protein= NP_524929;, nucleotide= NM_080190;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071013 // catalytic step 2 spliceosome // inferred from direct assay
FlyMine data for FBgn0001986.
BDGP gene expression has embryonic in situ data for l(2)35Df: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0001986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 54 of 4 0.60Down
Head57 24 of 4 0.50Down
Eye44 24 of 4 0.39Down
Thoracicoabdominal ganglion76 54 of 4 0.70Down
Salivary gland50 44 of 4 0.44Down
Crop66 24 of 4 0.60Down
Midgut54 34 of 4 0.50Down
Tubule36 24 of 4 0.30Down
Hindgut49 44 of 4 0.40Down
Heart49 44 of 4 0.43Down
Fat body86 64 of 4 0.75Down
Ovary240 34 of 4 2.10Up
Testis105 44 of 4 0.90None
Male accessory glands97 54 of 4 0.90None
Virgin spermatheca73 74 of 4 0.64Down
Mated spermatheca77 44 of 4 0.67Down
Adult carcass56 34 of 4 0.50Down
Larval CNS223 104 of 4 1.96Up
Larval Salivary gland124 44 of 4 1.09None
Larval midgut40 34 of 4 0.36Down
Larval tubule29 14 of 4 0.30Down
Larval hindgut82 84 of 4 0.72Down
Larval fat body51 84 of 4 0.40Down
Larval trachea123 104 of 4 1.08None
Larval carcass103 164 of 4 0.90None
S2 cells (growing)200 34 of 4 1.75Up
Whole fly114 24 of 4

Looking for CG4152-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime