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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4154-RA through 18771 annotations produced 1 hits



chr3R:11009907-11015305 (+) // 100.0 // (Guanylyl cyclase at 88E):

Annotation Number : CG4154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629608_a_at
Accessions : protein= , nucleotide= NP_001036711; /// NP_650424; /// NP_731974;
Pathway : 0000302 // response to reactive oxygen species // inferred from direct assay /// 0006182 // cGMP biosynthetic process //
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0008074 // guanylate cyclase complex
FlyMine data for full length.
Homophila reports that CG4154 is a close match (3e-48) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 04 of 4 7.40Up
Head10 32 of 4 3.00None
Eye4 10 of 4 1.24None
Thoracicoabdominal ganglion26 34 of 4 7.40Up
Salivary gland5 10 of 4 1.37None
Crop7 10 of 4 2.00None
Midgut3 10 of 4 0.90None
Tubule2 00 of 4 0.60Down
Hindgut4 00 of 4 1.10None
Heart1 00 of 4 0.52None
Fat body7 60 of 4 1.97None
Ovary2 10 of 4 0.70None
Testis8 10 of 4 2.30Up
Male accessory glands4 10 of 4 1.20None
Virgin spermatheca3 10 of 4 0.97None
Mated spermatheca6 10 of 4 1.74None
Adult carcass6 20 of 4 1.70None
Larval CNS5 20 of 4 1.56None
Larval Salivary gland3 10 of 4 0.92None
Larval midgut5 20 of 4 1.54None
Larval tubule1 00 of 4 0.40None
Larval hindgut2 00 of 4 0.67None
Larval fat body2 00 of 4 0.60None
Larval trachea0 00 of 4 0.25None
Larval carcass1 00 of 4 0.49None
S2 cells (growing)1 00 of 4 0.46None
Whole fly3 10 of 4

Looking for CG4154-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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