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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4157-RA through 18771 annotations produced 1 hits



chr3L:16576082-16577121 (+) // 100.0 // (Rpn12):

Annotation Number : CG4157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640372_at
Accessions : protein= , nucleotide= NP_648904;
Pathway : 0000022 // mitotic spindle elongation // inferred from mutant phenotype /// 0006508 // proteolysis // inferred from dire
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // i
FlyMine data for full length.
BioGrid reports that CG4157 interacts with CG5648 CG9414 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 14 of 4 0.40Down
Head280 114 of 4 0.50Down
Eye225 114 of 4 0.38Down
Thoracicoabdominal ganglion223 54 of 4 0.40Down
Salivary gland480 244 of 4 0.82Down
Crop515 144 of 4 0.90None
Midgut602 224 of 4 1.00None
Tubule462 254 of 4 0.80Down
Hindgut405 144 of 4 0.70Down
Heart995 514 of 4 1.69Up
Fat body996 1074 of 4 1.69Up
Ovary910 104 of 4 1.50Up
Testis84 34 of 4 0.10Down
Male accessory glands436 304 of 4 0.70Down
Virgin spermatheca223 94 of 4 0.38Down
Mated spermatheca226 74 of 4 0.39Down
Adult carcass704 254 of 4 1.20Up
Larval CNS707 604 of 4 1.20Up
Larval Salivary gland958 664 of 4 1.63Up
Larval midgut1087 1184 of 4 1.85Up
Larval tubule1581 74 of 4 2.70Up
Larval hindgut842 484 of 4 1.43Up
Larval fat body700 814 of 4 1.20None
Larval trachea682 704 of 4 1.16None
Larval carcass1042 1284 of 4 1.77Up
S2 cells (growing)531 124 of 4 0.90None
Whole fly587 244 of 4

Looking for CG4157-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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