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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4161-RA through 18771 annotations produced 1 hits



(CG4161):

Annotation Number : CG4161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028892
Gbrowse : chr2L:15433361-15435250 (+) // 100.0 //
Probeset : 1630482_at
Accessions : protein= NP_609753;, nucleotide= NM_135909;
FlyMine data for FBgn0028892.
BioGrid reports that CG4161 interacts with CG4394 .
VDRC has 2 RNAi stocks for FBgn0028892 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.10Down
Head5 ± 02 of 4 0.10Down
Eye4 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland21 ± 22 of 4 0.22Down
Crop7 ± 12 of 4 0.10Down
Midgut3 ± 00 of 4 0.00Down
Tubule6 ± 01 of 4 0.10Down
Hindgut5 ± 01 of 4 0.10Down
Heart4 ± 11 of 4 0.04Down
Fat body9 ± 33 of 4 0.10Down
Ovary2 ± 00 of 4 0.00Down
Testis1114 ± 104 of 411.80Up
Male accessory glands14 ± 23 of 4 0.20Down
Virgin spermatheca14 ± 14 of 4 0.15Down
Mated spermatheca14 ± 43 of 4 0.15Down
Adult carcass16 ± 42 of 4 0.20Down
Larval CNS6 ± 42 of 4 0.07Down
Larval Salivary gland4 ± 00 of 4 0.04Down
Larval midgut5 ± 11 of 4 0.06Down
Larval tubule7 ± 11 of 4 0.10Down
Larval hindgut5 ± 01 of 4 0.06Down
Larval fat body108 ± 614 of 4 1.20None
Larval trachea5 ± 31 of 4 0.06Down
Larval carcass9 ± 12 of 4 0.10Down
S2 cells (growing)7 ± 02 of 4 0.08Down
Whole fly94 ± 84 of 4

Looking for CG4161-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime