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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4163-RA through 18771 annotations produced 1 hits



lethal(2)35Fb (Cyp303a1):

Annotation Number : CG4163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001992
Gbrowse : chr2L:16294350-16295862 (+) // 100.0 //
Probeset : 1628551_at
Accessions : protein= NP_652070;, nucleotide= NM_143813;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0001992.
Homophila reports that CG4163 is a close match (2e-11) to human gene CYP5;GHOSAL;TBXAS1 (NP_001052), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
VDRC has 3 RNAi stocks for FBgn0001992 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 2.60None
Head2 00 of 4 1.80None
Eye0 00 of 4 0.35None
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland8 20 of 4 5.37None
Crop1 00 of 4 1.20None
Midgut1 00 of 4 0.70None
Tubule1 00 of 4 1.00None
Hindgut2 00 of 4 1.80None
Heart1 00 of 4 0.73None
Fat body1 10 of 4 1.18None
Ovary1 00 of 4 0.80None
Testis1 00 of 4 0.70None
Male accessory glands6 32 of 4 4.60None
Virgin spermatheca0 00 of 4 0.43None
Mated spermatheca1 00 of 4 1.05None
Adult carcass3 10 of 4 2.50None
Larval CNS2 10 of 4 1.37None
Larval Salivary gland1 00 of 4 1.23None
Larval midgut2 00 of 4 1.33None
Larval tubule3 00 of 4 2.40None
Larval hindgut1 00 of 4 0.83None
Larval fat body3 20 of 4 2.20None
Larval trachea2 10 of 4 1.38None
Larval carcass0 00 of 4 0.65None
S2 cells (growing)1 00 of 4 1.28None
Whole fly1 10 of 4

Looking for CG4163-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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