Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4164-RA through 18771 annotations produced 1 hits



(CG4164):

Annotation Number : CG4164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031256
Gbrowse : chr2L:453110-454654 (+) // 100.0 //
Probeset : 1637650_at
Accessions : protein= NP_608525;, nucleotide= NM_134681;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0031072 // heat shock protein binding // inferred f
FlyMine data for FBgn0031256.
BDGP gene expression has embryonic in situ data for CG4164: 13 pix of staining in 10 body parts.
BioGrid reports that CG4164 interacts with CG5278 .
TRiP has 1 RNAi stocks for FBgn0031256 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 14 of 4 0.60Down
Head249 144 of 4 0.90None
Eye239 114 of 4 0.88None
Thoracicoabdominal ganglion171 44 of 4 0.60Down
Salivary gland587 424 of 4 2.15Up
Crop247 134 of 4 0.90None
Midgut346 84 of 4 1.30Up
Tubule213 374 of 4 0.80None
Hindgut142 14 of 4 0.50Down
Heart547 174 of 4 2.00Up
Fat body476 474 of 4 1.74Up
Ovary376 74 of 4 1.40Up
Testis175 44 of 4 0.60Down
Male accessory glands1160 1024 of 4 4.20Up
Virgin spermatheca522 494 of 4 1.91Up
Mated spermatheca490 454 of 4 1.79Up
Adult carcass287 324 of 4 1.10None
Larval CNS300 364 of 4 1.10None
Larval Salivary gland1323 134 of 4 4.84Up
Larval midgut326 134 of 4 1.19Up
Larval tubule439 144 of 4 1.60Up
Larval hindgut245 264 of 4 0.90None
Larval fat body296 614 of 4 1.10None
Larval trachea299 974 of 4 1.10None
Larval carcass299 244 of 4 1.09None
S2 cells (growing)853 174 of 4 3.12Up
Whole fly273 124 of 4

Looking for CG4164-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime