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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4166-RA through 18771 annotations produced 1 hits

nonstop (not):

Annotation Number : CG4166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013717
Gbrowse : chr3L:18611900-18615308 (-) // 100.0 //
Probeset : 1624354_at
Accessions : protein= NP_524140;, nucleotide= NM_079416;
Pathway : DNA-dependent // inferred from mutant phenotype"
Interpro : 0000124 // SAGA complex // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotatio
FlyMine data for FBgn0013717.
Homophila reports that CG4166 is a close match (6e-15) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG4166 interacts with CG4097 .
TRiP has 1 RNAi stocks for FBgn0013717 available for purchase.
VDRC has 2 RNAi stocks for FBgn0013717 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 44 of 4 1.40Up
Head58 44 of 4 0.50Down
Eye55 34 of 4 0.50Down
Thoracicoabdominal ganglion138 84 of 4 1.20Up
Salivary gland40 54 of 4 0.36Down
Crop84 24 of 4 0.80Down
Midgut54 44 of 4 0.50Down
Tubule40 24 of 4 0.40Down
Hindgut54 44 of 4 0.50Down
Heart77 64 of 4 0.70Down
Fat body76 54 of 4 0.69Down
Ovary229 44 of 4 2.10Up
Testis66 34 of 4 0.60Down
Male accessory glands45 24 of 4 0.40Down
Virgin spermatheca117 74 of 4 1.06None
Mated spermatheca118 54 of 4 1.07None
Adult carcass49 24 of 4 0.40Down
Larval CNS253 174 of 4 2.29Up
Larval Salivary gland48 64 of 4 0.44Down
Larval midgut78 34 of 4 0.71Down
Larval tubule129 34 of 4 1.20Up
Larval hindgut96 34 of 4 0.87None
Larval fat body174 104 of 4 1.60Up
Larval trachea147 94 of 4 1.33Up
Larval carcass81 84 of 4 0.74Down
S2 cells (growing)54 14 of 4 0.49Down
Whole fly110 54 of 4

Looking for CG4166-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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