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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4167-RA through 18771 annotations produced 1 hits



Gene 1 (Hsp67Ba):

Annotation Number : CG4167
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001227
Gbrowse : chr3L:9371201-9372539 (-) // 100.0 //
Probeset : 1638730_at
Accessions : protein= NP_523998;, nucleotide= NM_079274;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001227.
Homophila reports that CG4167 is a close match (1e-13) to human gene CRYA1;CRYAA (NP_000385), a gene associated with Cataract, autosomal dominant nuclear (3);Cataract, congenital, autosomal recessive (3);Cataract, zonular central nuclear, autosomal dominant (3).
BioGrid reports that CG4167 interacts with CG9913 CG6949 CG6958 CG7340 CG7726 CG8083 CG8600 CG8805 CG9342 CG9358 CG9520 .
VDRC has 3 RNAi stocks for FBgn0001227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 ± 54 of 410.70Up
Head36 ± 23 of 4 3.00Up
Eye8 ± 20 of 4 0.66None
Thoracicoabdominal ganglion182 ± 94 of 414.90Up
Salivary gland13 ± 20 of 4 1.11None
Crop5 ± 10 of 4 0.40Down
Midgut5 ± 20 of 4 0.40None
Tubule10 ± 20 of 4 0.90None
Hindgut4 ± 10 of 4 0.30Down
Heart7 ± 30 of 4 0.61None
Fat body12 ± 80 of 4 1.02None
Ovary3 ± 10 of 4 0.30Down
Testis36 ± 14 of 4 2.90Up
Male accessory glands9 ± 20 of 4 0.70None
Virgin spermatheca9 ± 30 of 4 0.80None
Mated spermatheca8 ± 20 of 4 0.73None
Adult carcass3 ± 10 of 4 0.30Down
Larval CNS382 ± 234 of 431.17Up
Larval Salivary gland18 ± 30 of 4 1.52None
Larval midgut11 ± 20 of 4 0.91None
Larval tubule191 ± 204 of 415.60Up
Larval hindgut5 ± 10 of 4 0.43Down
Larval fat body17 ± 00 of 4 1.40None
Larval trachea28 ± 102 of 4 2.30Up
Larval carcass29 ± 52 of 4 2.36Up
S2 cells (growing)6 ± 10 of 4 0.52Down
Whole fly12 ± 10 of 4

Looking for CG4167-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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